Strain Fitness in Pseudomonas putida KT2440 around PP_4705

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
5,349,600	+		PP_4704	0.71	-0.5
5,349,600	+		PP_4704	0.71	+0.5
5,349,600	+		PP_4704	0.71	-1.1
5,349,600	+		PP_4704	0.71	+1.3
5,349,601	-		PP_4704	0.71	+1.1
5,349,601	-		PP_4704	0.71	+0.5
5,349,640	+		PP_4704	0.72	+0.2
5,349,640	+		PP_4704	0.72	+0.7
5,349,640	+		PP_4704	0.72	+1.1
5,349,641	-		PP_4704	0.72	+1.6
5,349,641	-		PP_4704	0.72	-0.4
5,349,643	+		PP_4704	0.72	-1.0
5,349,643	+		PP_4704	0.72	-2.1
5,349,644	-		PP_4704	0.72	+0.7
5,349,644	-		PP_4704	0.72	+0.9
5,349,644	-		PP_4704	0.72	-0.9
5,349,644	-		PP_4704	0.72	+1.4
5,349,887	+		PP_4704	0.80	+0.9
5,349,888	-		PP_4704	0.80	-0.1
5,350,092	+		PP_4704	0.87	+0.6
5,350,093	-		PP_4704	0.87	+0.1
5,350,188	+				+0.1
5,350,189	-				+1.5
5,350,189	-				-1.1
5,350,347	+				+0.2
5,350,347	+				+0.0
5,350,348	-				-0.2
5,350,386	+				-0.2
5,350,387	-				-0.1
5,350,387	-				-0.1
5,350,398	-				-0.7
5,350,462	-				-0.5
5,350,501	+				+0.7
5,350,502	-				+0.3
5,350,579	+				-3.0
5,350,579	+				+0.1
5,350,687	+		PP_4705	0.34	-0.9
5,350,688	-		PP_4705	0.35	-0.7
5,350,693	+		PP_4705	0.36	+0.4
5,350,694	-		PP_4705	0.36	-2.0
5,350,735	+		PP_4705	0.46	-0.2
5,350,813	+		PP_4705	0.65	-1.5
5,350,814	-		PP_4705	0.65	-1.2
5,350,867	+		PP_4705	0.78	-0.7
5,351,024	+				-0.7
5,351,025	-				+1.2
5,351,035	+				-0.3
5,351,172	+		PP_4706	0.50	+0.7
5,351,172	+		PP_4706	0.50	+0.7
5,351,173	-		PP_4706	0.51	-0.2
5,351,173	-		PP_4706	0.51	+0.3
5,351,173	-		PP_4706	0.51	+1.0
5,351,179	-		PP_4706	0.53	+0.1
5,351,205	+		PP_4706	0.61	+0.5
5,351,205	+		PP_4706	0.61	-0.8
5,351,206	-		PP_4706	0.62	-0.1
5,351,206	-		PP_4706	0.62	+0.5
5,351,316	+				+0.9
5,351,317	-				-0.6
5,351,317	-				-0.6
5,351,317	-				+0.2
5,351,317	-				-0.3
5,351,398	+				+0.5
5,351,424	+				-0.0
5,351,425	-				-0.2
5,351,425	-				-0.6
5,351,425	-				+0.1
5,351,454	-		PP_4707	0.16	-1.0
5,351,454	-		PP_4707	0.16	-0.6
5,351,591	+		PP_4707	0.55	-0.5
5,351,721	-				+0.1
5,351,783	+				+0.0
5,351,800	+				-0.7
5,351,800	+				-0.1
5,351,801	-				+0.6
5,351,808	+				+0.0