Strain Fitness in Pseudomonas putida KT2440 around PP_4338

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
4,926,986	+		PP_4337	0.19	-1.6
4,926,986	+		PP_4337	0.19	+0.4
4,926,987	-		PP_4337	0.20	-0.7
4,927,031	+		PP_4337	0.24	+0.1
4,927,031	+		PP_4337	0.24	-1.9
4,927,306	-		PP_4337	0.48	+0.6
4,927,306	-		PP_4337	0.48	+0.2
4,927,420	-		PP_4337	0.58	-0.3
4,927,466	+		PP_4337	0.63	-0.2
4,927,466	+		PP_4337	0.63	-1.3
4,927,466	+		PP_4337	0.63	+0.2
4,927,466	+		PP_4337	0.63	-0.9
4,927,689	+		PP_4337	0.83	-0.5
4,927,882	-				-0.4
4,927,893	+				+0.1
4,927,893	+				-0.7
4,927,933	+				-0.3
4,927,933	+				+0.3
4,928,190	+		PP_4338	0.12	-0.2
4,928,191	-		PP_4338	0.12	-1.1
4,928,523	+		PP_4338	0.27	-1.1
4,928,523	+		PP_4338	0.27	-1.3
4,928,523	+		PP_4338	0.27	-1.4
4,928,676	-		PP_4338	0.33	-0.8
4,928,676	-		PP_4338	0.33	-1.0
4,928,783	+		PP_4338	0.38	-2.2
4,928,783	+		PP_4338	0.38	-0.8
4,928,784	-		PP_4338	0.38	-3.8
4,928,784	-		PP_4338	0.38	-1.7
4,928,784	-		PP_4338	0.38	-1.8
4,928,909	-		PP_4338	0.44	-1.0
4,928,909	-		PP_4338	0.44	-0.7
4,929,260	+		PP_4338	0.59	-0.4
4,929,260	+		PP_4338	0.59	+0.3
4,929,261	-		PP_4338	0.59	-1.0
4,929,261	-		PP_4338	0.59	-0.5
4,930,019	+				-0.6
4,930,019	+				-1.1
4,930,019	+				-1.1
4,930,019	+				+0.1
4,930,019	+				-0.3
4,930,020	-				+0.1
4,930,020	-				-0.8
4,930,020	-				-0.4
4,930,020	-				-0.9
4,930,112	+				-0.7
4,930,113	-				-2.4
4,930,128	-				+0.1
4,930,185	+				-0.2
4,930,186	-				-0.9
4,930,249	+				+1.2
4,930,334	+		PP_4339	0.19	-0.1
4,930,335	-		PP_4339	0.19	-1.3
4,930,450	-		PP_4339	0.34	-0.5
4,930,450	-		PP_4339	0.34	-0.4
4,930,701	+		PP_4339	0.66	+0.5
4,930,701	+		PP_4339	0.66	-0.1
4,930,701	+		PP_4339	0.66	+0.0
4,930,701	+		PP_4339	0.66	-0.3
4,930,701	+		PP_4339	0.66	-0.3
4,930,701	+		PP_4339	0.66	-0.5
4,930,702	-		PP_4339	0.66	-0.5
4,930,702	-		PP_4339	0.66	-0.3
4,930,702	-		PP_4339	0.66	+0.3
4,930,702	-		PP_4339	0.66	+0.0
4,930,702	-		PP_4339	0.66	-1.1
4,930,726	+		PP_4339	0.69	-0.7
4,930,726	+		PP_4339	0.69	-0.2
4,931,068	+		PP_4340	0.19	-1.0
4,931,068	+		PP_4340	0.19	-0.7
4,931,068	+		PP_4340	0.19	-0.4