Strain Fitness in Pseudomonas putida KT2440 around PP_4159

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
4,700,107	+				-0.1
4,700,107	+		PP_4158	0.78	-1.3
4,700,281	+		PP_4158	0.85	-0.1
4,700,281	+		PP_4158	0.85	+0.8
4,700,282	-		PP_4158	0.85	+0.0
4,700,282	-		PP_4158	0.85	-0.5
4,700,282	-		PP_4158	0.85	+0.6
4,700,699	+				+0.4
4,700,699	+				+0.9
4,700,700	-				-0.4
4,700,746	+				-1.1
4,700,747	-				+0.1
4,700,768	+				+0.9
4,700,812	+				-0.7
4,700,992	-		PP_4159	0.28	+0.1
4,701,169	-		PP_4159	0.59	-0.2
4,701,308	-		PP_4159	0.84	-1.9
4,701,380	+				-0.9
4,701,380	+				+0.1
4,701,384	+				+0.9
4,701,384	+				-0.1
4,701,384	+				-0.9
4,701,384	+				-1.0
4,701,384	+				+0.8
4,701,385	-				-0.6
4,701,385	-				+0.7
4,701,385	-				-1.4
4,701,385	-				-0.7
4,701,385	-				-1.0
4,701,570	-				+0.5
4,701,659	-		PP_4160	0.12	-0.2
4,701,694	+		PP_4160	0.14	-0.7
4,701,771	+		PP_4160	0.18	-0.3
4,701,771	+		PP_4160	0.18	-0.3
4,701,772	-		PP_4160	0.18	+0.3
4,701,861	+		PP_4160	0.22	-3.3
4,701,861	+		PP_4160	0.22	-0.6
4,701,861	+		PP_4160	0.22	-0.1
4,701,861	+		PP_4160	0.22	+0.8
4,701,861	+		PP_4160	0.22	-0.6
4,701,862	-		PP_4160	0.22	-0.3
4,702,384	+		PP_4160	0.48	-1.7
4,702,385	-		PP_4160	0.48	+0.3