Strain Fitness in Pseudomonas putida KT2440 around PP_4084

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
4,612,196	+				+0.6
4,612,197	-				-0.2
4,612,207	+				-0.5
4,612,208	-				+0.3
4,612,534	+				+0.5
4,612,558	+				-0.8
4,612,559	-				-0.1
4,612,855	+				+0.4
4,612,855	+				-0.4
4,612,880	+				+0.2
4,613,137	+				+0.0
4,613,138	-				+0.3
4,613,170	+				+0.5
4,613,170	+				-1.3
4,613,170	+				+0.8
4,613,171	-				+1.0
4,613,171	-				+0.2
4,613,318	-		PP_4084	0.40	-3.6
4,613,320	+		PP_4084	0.41	+0.0
4,613,348	+		PP_4084	0.47	-0.9
4,613,499	+		PP_4084	0.82	+0.1
4,613,499	+		PP_4084	0.82	-1.8
4,613,500	-		PP_4084	0.82	+0.3
4,613,614	+				-0.5
4,613,723	-				+0.9
4,613,723	-				+1.1
4,613,723	-				-0.0
4,613,726	+				+0.5
4,613,726	+				+0.1
4,613,726	+				-1.7
4,613,726	+				+0.7
4,613,726	+				-0.7
4,613,726	+				-1.1
4,613,726	+				+2.1
4,613,727	-				+1.5
4,613,727	-				+0.1
4,613,981	-				+1.2
4,614,107	+		PP_4085	0.10	+0.4
4,614,107	+		PP_4085	0.10	-0.0
4,614,107	+		PP_4085	0.10	+0.1
4,614,107	+		PP_4085	0.10	+0.7
4,614,108	-		PP_4085	0.10	-0.3
4,614,141	+		PP_4085	0.11	+0.7
4,614,141	+		PP_4085	0.11	-0.5
4,614,141	+		PP_4085	0.11	+0.5
4,614,142	-		PP_4085	0.11	+0.6
4,614,142	-		PP_4085	0.11	+0.7
4,614,142	-		PP_4085	0.11	-0.0
4,614,142	-		PP_4085	0.11	+0.5
4,614,142	-		PP_4085	0.11	-0.0
4,614,273	+		PP_4085	0.14	-1.6
4,614,273	+		PP_4085	0.14	-0.1
4,614,273	+		PP_4085	0.14	-0.8
4,614,273	+		PP_4085	0.14	+0.7
4,614,273	+		PP_4085	0.14	+0.8
4,614,273	+		PP_4085	0.14	+0.1
4,614,273	+		PP_4085	0.14	-0.2
4,614,274	-		PP_4085	0.14	+1.0
4,614,274	-		PP_4085	0.14	-1.0
4,614,274	-		PP_4085	0.14	-0.3
4,614,351	+		PP_4085	0.16	+0.8
4,614,430	+		PP_4085	0.17	-0.9
4,614,440	-		PP_4085	0.18	-2.9
4,614,454	+		PP_4085	0.18	+0.3
4,614,454	+		PP_4085	0.18	+0.9
4,614,455	-		PP_4085	0.18	+0.1
4,614,455	-		PP_4085	0.18	+1.6
4,614,492	+		PP_4085	0.19	+0.3
4,614,493	-		PP_4085	0.19	-0.5
4,614,493	-		PP_4085	0.19	+0.7