Strain Fitness in Pseudomonas putida KT2440 around PP_3768

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
4,296,244	+				-1.4
4,296,244	+				-1.3
4,296,245	-				-0.3
4,296,245	-				+0.3
4,296,429	+		PP_3766	0.23	-0.7
4,296,495	+		PP_3766	0.36	-1.0
4,296,495	+		PP_3766	0.36	-0.5
4,296,627	+		PP_3766	0.61	-0.1
4,296,831	+				+0.6
4,296,887	+				+0.5
4,296,887	+				+1.0
4,296,887	+				+0.4
4,296,887	+				+0.3
4,296,887	+				+0.1
4,296,888	-				-0.1
4,296,888	-				-0.2
4,296,888	-				+0.3
4,296,888	-				-0.7
4,296,889	+				+0.9
4,296,889	+				-0.3
4,296,889	+				+0.1
4,296,889	+				+1.6
4,296,889	+				+1.6
4,296,889	+				-0.1
4,296,890	-				+0.6
4,296,890	-				+0.2
4,296,890	-				-0.6
4,296,890	-				-0.7
4,296,890	-				-0.8
4,296,890	-				-0.8
4,296,890	-				-0.2
4,296,898	-				-0.9
4,296,910	+				-0.1
4,296,910	+				-1.1
4,296,910	+				-0.2
4,296,910	+				-0.0
4,296,910	+				-0.4
4,296,910	+				+0.1
4,296,910	+				+0.9
4,296,911	-				-0.8
4,296,924	-				+0.5
4,297,010	-		PP_3767	0.33	-0.5
4,297,059	+		PP_3767	0.53	-0.6
4,297,059	+		PP_3767	0.53	-0.5
4,297,059	+		PP_3767	0.53	-0.5
4,297,060	-		PP_3767	0.53	-0.0
4,297,060	-		PP_3767	0.53	+0.2
4,297,060	-		PP_3767	0.53	-0.2
4,297,060	-		PP_3767	0.53	+1.2
4,297,226	+				+0.3
4,297,226	+				+1.5
4,297,226	+				-0.9
4,297,226	+				+0.0
4,297,226	+				+0.5
4,297,226	+				-0.2
4,297,227	-				+0.1
4,297,227	-				-0.3
4,297,227	-				-0.2
4,297,227	-				+0.8
4,297,227	-				-0.8
4,297,229	+				+0.2
4,297,229	+				+0.8
4,297,229	+				-0.8
4,297,229	+				+0.4
4,297,229	+				-0.2
4,297,229	+				-1.4
4,297,229	+				-0.6
4,297,229	+				+0.6
4,297,229	+				+0.3
4,297,229	+				-1.3
4,297,230	-				-0.2
4,297,230	-				+0.7
4,297,230	-				-0.1
4,297,233	+				-0.5
4,297,233	+				+0.2
4,297,233	+				-0.7
4,297,233	+				-0.9
4,297,237	+				+0.9
4,297,237	+				+0.2
4,297,296	+				-0.6
4,297,746	+		PP_3768	0.63	-1.7
4,297,746	+		PP_3768	0.63	-1.5
4,297,746	+		PP_3768	0.63	-0.3
4,297,746	+		PP_3768	0.63	-2.5
4,297,747	-		PP_3768	0.63	-0.9
4,297,848	+		PP_3768	0.75	-0.7
4,297,848	+		PP_3768	0.75	-1.4
4,297,849	-		PP_3768	0.75	-2.0
4,297,935	+		PP_3768	0.86	-1.8
4,297,938	+		PP_3768	0.86	-1.1
4,297,939	-		PP_3768	0.86	-0.4
4,297,939	-		PP_3768	0.86	-0.9
4,297,962	+		PP_3768	0.89	-1.9
4,298,053	+				-1.5
4,298,054	-				-0.2
4,298,054	-				+0.8
4,298,084	+				-1.0
4,298,120	+				-2.8
4,298,120	+				-1.1
4,298,131	+				-1.9
4,298,132	-				+0.6
4,298,170	+				-2.0
4,298,170	+				-2.0
4,298,171	-				+0.4
4,298,171	-				-0.5
4,298,171	-				-0.4
4,298,173	+				-0.8
4,298,173	+				-2.0
4,298,173	+				+0.3
4,298,174	-				+2.4
4,298,174	-				+0.7
4,298,215	-				-0.0
4,298,320	+		PP_3769	0.30	-1.1
4,298,339	+		PP_3769	0.35	-3.4
4,298,339	+		PP_3769	0.35	-3.5
4,298,340	-		PP_3769	0.35	+0.4
4,298,404	+		PP_3769	0.53	-3.5
4,298,404	+		PP_3769	0.53	-4.7
4,298,425	+		PP_3769	0.59	-3.5
4,298,426	-		PP_3769	0.60	-1.7
4,298,426	-		PP_3769	0.60	-0.4
4,298,429	-		PP_3769	0.60	-0.4
4,298,446	+		PP_3769	0.65	-4.1
4,298,446	+		PP_3769	0.65	-1.5
4,298,447	-		PP_3769	0.66	-1.5
4,298,447	-		PP_3769	0.66	-0.4
4,298,447	-		PP_3769	0.66	+0.3
4,298,447	-		PP_3769	0.66	+0.6
4,298,450	+		PP_3769	0.66	-1.8
4,298,451	-		PP_3769	0.67	-0.4
4,298,473	+		PP_3769	0.73	-2.2
4,298,474	-		PP_3769	0.73	+0.7
4,298,477	-		PP_3769	0.74	+0.1
4,298,485	+		PP_3769	0.76	-1.6
4,298,488	+		PP_3769	0.77	-3.3
4,298,488	+		PP_3769	0.77	-1.6
4,298,524	+		PP_3769	0.87	-4.0
4,298,524	+		PP_3769	0.87	-5.0
4,298,524	+		PP_3769	0.87	-3.7
4,298,524	+		PP_3769	0.87	-2.5
4,298,524	+		PP_3769	0.87	-2.1
4,298,524	+		PP_3769	0.87	-2.4
4,298,525	-		PP_3769	0.88	+0.3
4,298,525	-		PP_3769	0.88	+0.9
4,298,525	-		PP_3769	0.88	-0.5
4,298,527	+		PP_3769	0.88	-2.5
4,298,527	+		PP_3769	0.88	-2.4
4,298,527	+		PP_3769	0.88	-3.8
4,298,527	+		PP_3769	0.88	-3.3
4,298,545	+				-1.6
4,298,546	-				+0.2
4,298,546	-				+0.5
4,298,631	+				-0.8
4,298,636	+				-3.4
4,298,636	+				-3.7
4,298,637	-				-1.3
4,298,649	+				-3.4
4,298,650	-				+0.7
4,298,744	+		PP_3770	0.44	-0.4
4,298,745	-		PP_3770	0.45	-0.5
4,298,745	-		PP_3770	0.45	+0.3
4,298,745	-		PP_3770	0.45	+0.4
4,298,872	-				+0.2
4,298,950	+				-0.6
4,298,950	+				+0.5
4,298,951	-				-0.0
4,298,962	+				+0.4
4,298,962	+				+0.2
4,298,962	+				-0.2
4,298,963	-				-0.6
4,299,000	-		PP_3771	0.17	-0.3