Strain Fitness in Pseudomonas putida KT2440 around PP_3387

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
3,834,545	+		PP_3386	0.56	-0.4
3,834,707	+		PP_3386	0.63	-0.9
3,834,708	-		PP_3386	0.63	-0.4
3,834,708	-		PP_3386	0.63	+0.3
3,834,753	-		PP_3386	0.65	-0.2
3,834,753	-		PP_3386	0.65	+0.2
3,834,776	+		PP_3386	0.66	-2.1
3,834,777	-		PP_3386	0.66	+0.5
3,834,826	+		PP_3386	0.68	-0.1
3,835,134	+		PP_3386	0.83	+1.7
3,835,263	-		PP_3386	0.88	+0.8
3,835,335	+				+0.1
3,835,336	-				-1.0
3,835,336	-				-0.1
3,835,387	+				-0.3
3,835,568	-				+0.4
3,835,879	+		PP_3387	0.42	-0.5
3,835,879	+		PP_3387	0.42	-1.1
3,835,913	+		PP_3387	0.46	+1.6
3,835,913	+		PP_3387	0.46	-0.2
3,835,914	-		PP_3387	0.46	-0.1
3,836,203	+		PP_3387	0.78	+2.5
3,836,204	-		PP_3387	0.79	+2.0
3,836,204	-		PP_3387	0.79	-0.3
3,836,257	+		PP_3387	0.85	+1.3
3,836,258	-		PP_3387	0.85	+0.2
3,836,295	+		PP_3387	0.89	+0.8
3,836,296	-		PP_3387	0.89	+1.1
3,836,435	-				+0.9
3,836,435	-				-1.1
3,836,584	-				-0.7
3,836,742	+		PP_3388	0.13	-0.2
3,836,832	+		PP_3388	0.16	-0.0
3,836,871	-		PP_3388	0.17	+0.5
3,836,908	-		PP_3388	0.19	-0.2
3,836,908	-		PP_3388	0.19	+0.8
3,837,071	-		PP_3388	0.25	-0.4
3,837,340	-		PP_3388	0.35	-0.4