Strain Fitness in Pseudomonas putida KT2440 around PP_2096

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,388,320	+				-1.9
2,388,384	+				+0.2
2,388,384	+				-1.2
2,388,437	-		PP_5502	0.14	-1.9
2,388,472	+		PP_5502	0.30	-0.3
2,388,573	+		PP_5502	0.77	-0.2
2,388,585	+		PP_5502	0.82	-0.4
2,388,585	+		PP_5502	0.82	+0.0
2,388,586	-		PP_5502	0.83	-0.3
2,388,586	-		PP_5502	0.83	+0.5
2,388,623	-				-0.9
2,388,623	-				-0.7
2,388,649	+				-0.0
2,388,649	+				+0.3
2,388,649	+				+0.3
2,388,649	+				+0.0
2,388,649	+				-0.0
2,388,650	-				-0.7
2,388,650	-				-0.3
2,388,650	-				+0.4
2,388,650	-				+0.2
2,388,650	-				-0.4
2,388,650	-				-0.8
2,388,765	-				-0.3
2,388,803	+				+0.2
2,388,803	+				+1.2
2,388,803	+				-0.6
2,388,804	-				-2.0
2,388,811	+				-0.0
2,388,835	-				-0.8
2,388,835	-				-0.6
2,388,991	-				+1.6
2,388,996	+				-0.7
2,388,996	+				+1.3
2,389,011	+				+0.4
2,389,011	+				-0.5
2,389,011	+				-0.0
2,389,011	+				+0.6
2,389,011	+				-0.1
2,389,011	+				+0.0
2,389,011	+				+0.2
2,389,012	-				-1.2
2,389,012	-				-2.1
2,389,012	-				-0.1
2,389,012	-				-0.9
2,389,012	-				-2.3
2,389,012	-				-0.5
2,389,012	-				-1.3
2,389,012	-				-1.2
2,389,118	+				+1.0
2,389,162	+				-1.2
2,389,180	+				-0.5
2,389,180	+				-2.1
2,389,181	-				-0.2
2,389,207	-				-0.3
2,389,364	-		PP_2096	0.10	-2.0
2,389,410	+		PP_2096	0.12	-0.7
2,389,410	+		PP_2096	0.12	-1.0
2,389,411	-		PP_2096	0.12	-1.1
2,389,760	+				+2.1
2,390,064	+		PP_2096	0.41	-0.2
2,390,065	-		PP_2096	0.41	-0.4
2,390,065	-		PP_2096	0.41	-1.3
2,390,176	-		PP_2096	0.46	-1.6
2,390,182	-		PP_2096	0.47	-0.8
2,390,273	+		PP_2096	0.51	-0.5
2,390,274	-		PP_2096	0.51	-0.0
2,390,274	-		PP_2096	0.51	-1.3
2,390,274	-		PP_2096	0.51	-0.9
2,390,286	-		PP_2096	0.51	-0.4
2,390,538	+		PP_2096	0.62	-0.4
2,390,560	-		PP_2096	0.63	-2.0
2,390,560	-		PP_2096	0.63	-1.9
2,390,580	+		PP_2096	0.64	-1.5
2,390,607	+		PP_2096	0.66	-0.5
2,390,608	-		PP_2096	0.66	-2.3
2,390,707	+		PP_2096	0.70	-3.5
2,390,707	+		PP_2096	0.70	-1.2
2,390,708	-		PP_2096	0.70	-0.2
2,390,748	+		PP_2096	0.72	-1.6
2,390,867	+		PP_2096	0.77	+0.1
2,390,867	+		PP_2096	0.77	-2.4
2,390,867	+		PP_2096	0.77	-0.3
2,390,867	+		PP_2096	0.77	-0.5
2,390,868	-		PP_2096	0.77	-0.1
2,391,034	-		PP_2096	0.85	-0.9
2,391,067	+		PP_2096	0.86	-2.9
2,391,068	-		PP_2096	0.86	+0.7
2,391,068	-		PP_2096	0.86	+0.0
2,391,068	-		PP_2096	0.86	-0.2
2,391,099	+		PP_2096	0.88	-1.1
2,391,146	+		PP_2096	0.90	-1.9
2,391,147	-		PP_2096	0.90	-1.8
2,391,158	-				-0.5
2,391,231	+				-0.7
2,391,286	-				-1.3
2,391,388	+				+0.4
2,391,389	-				-0.1
2,391,411	+				-0.7
2,391,412	-				-0.2
2,391,415	+				-0.8
2,391,415	+				-0.9
2,391,415	+				-1.3
2,391,415	+				+0.6
2,391,416	-				+0.2
2,391,417	+				+0.1
2,391,418	-				+0.2
2,391,418	-				-0.2
2,391,437	+				-1.0
2,391,471	+				+0.1
2,391,471	+				+0.4
2,391,471	+				-0.6
2,391,471	+				-1.2
2,391,471	+				-0.5
2,391,472	-				-0.6
2,391,607	+				-0.3
2,391,794	-		PP_2097	0.13	+0.1
2,391,871	+		PP_2097	0.17	-0.5
2,391,932	-		PP_2097	0.19	-1.0
2,391,946	+		PP_2097	0.20	+0.5
2,391,946	+		PP_2097	0.20	+0.2
2,391,947	-		PP_2097	0.20	-0.7
2,391,947	-				-1.1
2,391,949	-		PP_2097	0.20	+0.3
2,392,171	+		PP_2097	0.29	-1.1
2,392,171	+		PP_2097	0.29	+0.6
2,392,171	+		PP_2097	0.29	+0.4
2,392,171	+		PP_2097	0.29	-1.1
2,392,171	+		PP_2097	0.29	+0.1
2,392,171	+		PP_2097	0.29	+0.3
2,392,172	-		PP_2097	0.29	+0.2
2,392,172	-		PP_2097	0.29	-0.8
2,392,272	-		PP_2097	0.33	+0.3