Strain Fitness in Pseudomonas putida KT2440 around PP_2028

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,303,985	+		PP_2027	0.47	-1.9
2,303,985	-		PP_2027	0.47	-1.7
2,304,234	+		PP_2027	0.63	-3.3
2,304,234	+		PP_2027	0.63	-2.1
2,304,235	-		PP_2027	0.63	-1.9
2,304,363	+		PP_2027	0.71	-2.4
2,304,364	-		PP_2027	0.71	-0.6
2,304,382	-		PP_2027	0.72	-2.4
2,304,418	-		PP_2027	0.74	-2.7
2,304,418	-		PP_2027	0.74	-2.1
2,304,418	-		PP_2027	0.74	-0.8
2,304,452	+		PP_2027	0.76	-1.3
2,304,452	+		PP_2027	0.76	-3.8
2,304,453	-		PP_2027	0.76	-1.4
2,304,453	-		PP_2027	0.76	-4.4
2,304,453	-		PP_2027	0.76	-2.5
2,304,577	+		PP_2027	0.84	-1.3
2,304,577	+		PP_2027	0.84	-2.1
2,304,872	+				-0.8
2,305,280	+		PP_2028	0.26	-4.3
2,305,281	-		PP_2028	0.26	-1.9
2,305,338	-		PP_2028	0.29	-2.0
2,305,389	-		PP_2028	0.32	+1.2
2,305,832	+				+0.6
2,305,833	-		PP_2028	0.58	-2.2
2,305,961	-		PP_2028	0.65	-2.3
2,306,141	+		PP_2028	0.76	-1.9
2,306,141	+		PP_2028	0.76	+0.1
2,306,141	+		PP_2028	0.76	-2.3
2,306,142	-		PP_2028	0.76	-0.8
2,306,413	+				-4.1
2,306,413	+				-1.2
2,306,413	+				-2.3
2,306,414	-				-4.0
2,306,414	-				-1.6
2,306,483	+				-2.0
2,306,484	-				-2.3
2,306,719	+		PP_2029	0.15	-2.4
2,306,828	-		PP_2029	0.26	-2.3
2,306,951	-		PP_2029	0.37	-0.4
2,306,951	-		PP_2029	0.37	-3.5
2,307,193	+				+0.6
2,307,193	+		PP_2029	0.59	-3.6