Strain Fitness in Pseudomonas putida KT2440 around PP_2027

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,302,338	+				-0.3
2,302,539	-		PP_2026	0.13	-0.2
2,302,632	+		PP_2026	0.48	+0.1
2,302,632	+		PP_2026	0.48	-0.2
2,302,633	-		PP_2026	0.48	-0.3
2,302,633	-		PP_2026	0.48	-0.2
2,302,633	-		PP_2026	0.48	+0.4
2,302,719	+		PP_2026	0.80	+0.2
2,302,719	+		PP_2026	0.80	+0.9
2,302,719	+		PP_2026	0.80	-1.1
2,302,720	-		PP_2026	0.81	-0.7
2,302,720	-		PP_2026	0.81	+0.5
2,302,776	+				+0.3
2,302,867	+				+0.2
2,302,867	+				-1.1
2,302,903	+				-0.2
2,302,904	-				-0.2
2,302,915	+				+0.0
2,302,928	+				-1.1
2,302,929	-				+0.2
2,303,011	+				-0.2
2,303,011	+				-1.3
2,303,012	-				+1.2
2,303,012	-				+0.1
2,303,082	+				-1.0
2,303,083	-				+0.8
2,303,087	+				-1.0
2,303,087	+				+0.5
2,303,088	-				-1.0
2,303,088	-				-0.5
2,303,088	-				-0.7
2,303,096	-				-0.6
2,303,211	+				-0.4
2,303,211	+				-0.5
2,303,211	+				-0.2
2,303,212	-				-0.2
2,303,284	+				-0.4
2,303,284	+				-1.5
2,303,319	+				-2.8
2,303,319	+				-0.8
2,303,319	+				-1.6
2,303,337	+				-1.3
2,303,338	-				-2.2
2,303,985	+		PP_2027	0.47	-1.9
2,303,985	-		PP_2027	0.47	-1.7
2,304,234	+		PP_2027	0.63	-3.3
2,304,234	+		PP_2027	0.63	-2.1
2,304,235	-		PP_2027	0.63	-1.9
2,304,363	+		PP_2027	0.71	-2.4
2,304,364	-		PP_2027	0.71	-0.6
2,304,382	-		PP_2027	0.72	-2.4
2,304,418	-		PP_2027	0.74	-2.7
2,304,418	-		PP_2027	0.74	-2.1
2,304,418	-		PP_2027	0.74	-0.8
2,304,452	+		PP_2027	0.76	-1.3
2,304,452	+		PP_2027	0.76	-3.8
2,304,453	-		PP_2027	0.76	-1.4
2,304,453	-		PP_2027	0.76	-4.4
2,304,453	-		PP_2027	0.76	-2.5
2,304,577	+		PP_2027	0.84	-1.3
2,304,577	+		PP_2027	0.84	-2.1
2,304,872	+				-0.8
2,305,280	+		PP_2028	0.26	-4.3
2,305,281	-		PP_2028	0.26	-1.9
2,305,338	-		PP_2028	0.29	-2.0
2,305,389	-		PP_2028	0.32	+1.2
2,305,832	+				+0.6
2,305,833	-		PP_2028	0.58	-2.2