Strain Fitness in Pseudomonas putida KT2440 around PP_2005

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,273,429	+				-0.4
2,273,429	+				-0.2
2,273,429	+				+0.8
2,273,429	+				+0.3
2,273,430	-		PP_2004	0.10	-0.4
2,273,430	-		PP_2004	0.10	+0.4
2,273,430	-		PP_2004	0.10	+0.7
2,273,430	-		PP_2004	0.10	-0.7
2,273,430	-		PP_2004	0.10	-2.0
2,273,434	+		PP_2004	0.10	+0.5
2,273,435	-		PP_2004	0.10	+0.9
2,273,435	-		PP_2004	0.10	-0.1
2,273,468	+		PP_2004	0.14	+1.9
2,273,468	+		PP_2004	0.14	+1.2
2,273,468	+		PP_2004	0.14	-0.8
2,273,469	-		PP_2004	0.14	-1.0
2,273,469	-		PP_2004	0.14	-0.7
2,273,469	-		PP_2004	0.14	+1.0
2,273,560	+		PP_2004	0.22	+0.3
2,273,560	+		PP_2004	0.22	-0.8
2,273,561	-		PP_2004	0.23	-0.3
2,273,816	+		PP_2004	0.47	+0.3
2,273,828	+		PP_2004	0.48	+0.2
2,273,828	+		PP_2004	0.48	-0.5
2,273,828	+		PP_2004	0.48	-0.6
2,273,829	-				+2.4
2,273,942	+		PP_2004	0.59	-0.3
2,273,951	+		PP_2004	0.60	+0.1
2,273,951	+		PP_2004	0.60	-0.8
2,273,951	+		PP_2004	0.60	-1.1
2,273,966	+		PP_2004	0.61	+0.4
2,273,966	+		PP_2004	0.61	-0.0
2,273,966	+		PP_2004	0.61	-0.6
2,274,141	+		PP_2004	0.78	-0.5
2,274,142	-		PP_2004	0.78	-0.4
2,274,142	-		PP_2004	0.78	+0.4
2,274,152	-		PP_2004	0.79	-0.9
2,274,200	+		PP_2004	0.84	+0.3
2,274,201	-		PP_2004	0.84	+0.9
2,274,201	-		PP_2004	0.84	-1.0
2,274,201	-		PP_2004	0.84	+0.1
2,274,373	-				-0.4
2,274,671	+		PP_2005	0.27	-1.0
2,274,909	-		PP_2005	0.48	-1.2
2,274,909	-		PP_2005	0.48	-1.2
2,274,924	+		PP_2005	0.49	-1.2
2,274,924	+		PP_2005	0.49	-2.3
2,275,002	+		PP_2005	0.56	-1.1
2,275,002	+		PP_2005	0.56	-0.8
2,275,003	-		PP_2005	0.56	-0.6
2,275,149	+		PP_2005	0.70	-1.1
2,275,149	+		PP_2005	0.70	-2.4
2,275,149	+		PP_2005	0.70	-1.5
2,275,150	-		PP_2005	0.70	-0.9
2,275,187	-		PP_2005	0.73	-1.2
2,275,308	+		PP_2005	0.84	-0.4
2,275,395	+				-1.8
2,275,396	-				-0.1
2,275,611	+				-2.9
2,275,613	-				-0.6
2,275,756	+				+1.0
2,275,773	-				+0.8
2,275,773	-				-0.2
2,275,773	-				+0.6
2,276,102	+		PP_2006	0.26	+0.6
2,276,102	+		PP_2006	0.26	+0.3
2,276,102	+		PP_2006	0.26	+1.0
2,276,102	+		PP_2006	0.26	+1.1
2,276,102	+		PP_2006	0.26	-0.1
2,276,102	+		PP_2006	0.26	-0.3
2,276,103	-		PP_2006	0.26	-1.1
2,276,103	-		PP_2006	0.26	-0.2
2,276,103	-		PP_2006	0.26	+0.4
2,276,103	-		PP_2006	0.26	+0.9
2,276,104	+		PP_2006	0.26	-1.3
2,276,104	+		PP_2006	0.26	-1.1
2,276,104	+		PP_2006	0.26	+0.5
2,276,104	+		PP_2006	0.26	-0.8
2,276,104	+		PP_2006	0.26	+1.2
2,276,104	+		PP_2006	0.26	-0.1
2,276,104	+		PP_2006	0.26	+0.2
2,276,104	+		PP_2006	0.26	+0.9
2,276,105	-		PP_2006	0.26	+0.4
2,276,105	-		PP_2006	0.26	+0.5
2,276,105	-		PP_2006	0.26	+0.1
2,276,105	-		PP_2006	0.26	-0.9
2,276,105	-		PP_2006	0.26	+0.1
2,276,105	-		PP_2006	0.26	-0.1
2,276,105	-		PP_2006	0.26	-0.9
2,276,171	+		PP_2006	0.30	-0.0
2,276,171	+		PP_2006	0.30	+1.0
2,276,171	+		PP_2006	0.30	+0.0
2,276,171	+		PP_2006	0.30	+1.0
2,276,171	+		PP_2006	0.30	-0.8
2,276,171	+		PP_2006	0.30	-0.5
2,276,172	-		PP_2006	0.30	-0.4
2,276,193	+		PP_2006	0.31	+0.0
2,276,193	+		PP_2006	0.31	-0.4
2,276,203	+		PP_2006	0.32	-1.1
2,276,204	-				+0.6
2,276,204	-		PP_2006	0.32	-0.5
2,276,224	-		PP_2006	0.33	+0.3
2,276,226	-		PP_2006	0.33	-0.2
2,276,226	-		PP_2006	0.33	-0.1
2,276,270	+		PP_2006	0.36	+0.1
2,276,270	+		PP_2006	0.36	-0.6
2,276,270	+		PP_2006	0.36	+0.4
2,276,271	-		PP_2006	0.36	-1.1
2,276,402	+		PP_2006	0.44	+0.1
2,276,402	+		PP_2006	0.44	+0.2