Strain Fitness in Pseudomonas putida KT2440 around PP_1958

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,216,496	-				-2.5
2,216,702	-				-0.2
2,216,781	-		PP_5494	0.12	+1.0
2,216,836	-		PP_5494	0.21	-0.3
2,216,867	+		PP_5494	0.27	-0.0
2,216,868	-		PP_5494	0.27	+0.6
2,216,868	-		PP_5494	0.27	+0.2
2,216,871	+		PP_5494	0.27	+0.5
2,216,901	-		PP_5494	0.33	+0.1
2,217,045	-		PP_5494	0.58	+0.2
2,217,045	-		PP_5494	0.58	-0.2
2,217,060	-		PP_5494	0.61	+0.3
2,217,063	+		PP_5494	0.61	+0.4
2,217,064	-		PP_5494	0.61	-0.9
2,217,064	-		PP_5494	0.61	+0.3
2,217,143	+		PP_5494	0.75	+0.6
2,217,143	+		PP_5494	0.75	+0.2
2,217,144	-		PP_5494	0.75	-1.2
2,217,189	+		PP_5494	0.83	-0.7
2,217,190	-		PP_5494	0.83	-0.7
2,217,190	-		PP_5494	0.83	+0.6
2,217,190	-		PP_5494	0.83	+2.1
2,217,190	-		PP_5494	0.83	-0.2
2,217,196	-		PP_5494	0.84	-0.1
2,217,233	+				+0.0
2,217,258	+				+0.2
2,217,259	-				-0.0
2,217,266	+				+1.1
2,217,266	+				+0.4
2,217,328	-				-0.8
2,217,338	+				-0.7
2,217,339	-				+0.3
2,217,339	-				+0.8
2,217,348	+				+0.1
2,217,376	+				-1.1
2,217,376	+				-0.4
2,217,453	+		PP_1958	0.13	+1.0
2,217,454	-		PP_1958	0.13	+0.9
2,217,454	-		PP_1958	0.13	-0.0
2,217,454	-		PP_1958	0.13	+0.4
2,217,454	-		PP_1958	0.13	-0.2
2,217,454	-		PP_1958	0.13	-0.3
2,217,690	-		PP_1958	0.41	-0.0
2,217,840	+				+2.2
2,217,841	-		PP_1958	0.60	-0.3
2,217,898	+		PP_1958	0.67	-0.4
2,217,898	+		PP_1958	0.67	+0.6
2,217,898	+		PP_1958	0.67	+0.2
2,217,898	+				+0.2
2,217,898	+		PP_1958	0.67	+0.5
2,217,898	+		PP_1958	0.67	-0.0
2,217,899	-		PP_1958	0.67	+1.8
2,217,899	-		PP_1958	0.67	+0.3
2,217,899	-		PP_1958	0.67	+0.6
2,217,899	-		PP_1958	0.67	+0.6
2,217,899	-		PP_1958	0.67	-0.1
2,217,951	+		PP_1958	0.73	-0.0
2,217,986	-		PP_1958	0.77	+1.7
2,217,986	-		PP_1958	0.77	+1.0
2,217,991	+		PP_1958	0.78	+0.1
2,217,991	+		PP_1958	0.78	+0.3
2,217,991	+		PP_1958	0.78	+1.0
2,217,991	+		PP_1958	0.78	-0.5
2,217,992	-		PP_1958	0.78	+0.4
2,217,992	-		PP_1958	0.78	+0.0
2,217,992	-		PP_1958	0.78	+0.1
2,218,038	+		PP_1958	0.83	-0.2
2,218,038	+		PP_1958	0.83	+0.3
2,218,038	+		PP_1958	0.83	-0.3
2,218,039	-		PP_1958	0.84	+0.4
2,218,070	+		PP_1958	0.87	+1.3
2,218,100	+				-0.2
2,218,100	+				-0.3
2,218,100	+				-0.3
2,218,100	+				+0.0
2,218,100	+				+1.6
2,218,101	-				+0.0
2,218,101	-				-1.0
2,218,114	+				+2.9
2,218,114	+				-0.1
2,218,115	-				+0.2
2,218,132	-				-0.3
2,218,132	-				-0.2
2,218,216	-				-0.3
2,218,216	-				+0.6
2,218,277	+				-1.0
2,218,287	+				+0.5
2,218,307	+				+0.9
2,218,308	-				-0.3
2,218,314	+				-0.2
2,218,314	+				+0.6
2,218,379	-				+1.1
2,218,396	-				-1.1
2,218,396	-				+1.6
2,218,408	+				-1.5
2,218,424	-				+0.9
2,218,546	-		PP_5495	0.30	+0.3
2,218,597	+		PP_5495	0.42	-0.0
2,218,618	+		PP_5495	0.47	+0.2
2,218,824	+				-0.4
2,218,901	+				-0.1
2,219,138	-		PP_1959	0.19	-0.7