Strain Fitness in Pseudomonas putida KT2440 around PP_1909

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,153,342	+		PP_1908	0.39	+0.9
2,153,343	-				+3.2
2,153,348	+		PP_1908	0.39	-0.3
2,153,348	+		PP_1908	0.39	+0.5
2,153,396	+		PP_1908	0.44	-1.3
2,153,433	-		PP_1908	0.48	+0.8
2,153,435	+		PP_1908	0.48	+0.5
2,153,435	+		PP_1908	0.48	-0.1
2,153,435	+		PP_1908	0.48	+0.1
2,153,435	+		PP_1908	0.48	-0.2
2,153,436	-		PP_1908	0.48	-0.2
2,153,436	-		PP_1908	0.48	+1.0
2,153,436	-		PP_1908	0.48	-0.9
2,153,436	-		PP_1908	0.48	+0.5
2,153,462	+		PP_1908	0.51	-0.3
2,153,462	+		PP_1908	0.51	-1.4
2,153,463	-		PP_1908	0.51	+1.0
2,153,463	-		PP_1908	0.51	-0.1
2,153,463	-		PP_1908	0.51	-0.9
2,153,513	+		PP_1908	0.56	-0.5
2,153,541	+		PP_1908	0.59	-0.5
2,153,563	+		PP_1908	0.61	-0.2
2,153,563	+		PP_1908	0.61	+0.1
2,153,563	+		PP_1908	0.61	+2.0
2,153,563	+		PP_1908	0.61	-0.1
2,153,563	+		PP_1908	0.61	+1.2
2,153,563	+		PP_1908	0.61	+0.1
2,153,563	+		PP_1908	0.61	-0.6
2,153,563	+		PP_1908	0.61	-0.0
2,153,564	-		PP_1908	0.61	+1.6
2,153,564	-		PP_1908	0.61	+0.6
2,153,564	-		PP_1908	0.61	+0.5
2,153,564	-		PP_1908	0.61	+0.6
2,153,564	-		PP_1908	0.61	+0.4
2,153,707	+		PP_1908	0.76	-0.4
2,153,798	+		PP_1908	0.85	+0.5
2,153,798	+		PP_1908	0.85	+0.4
2,153,798	+		PP_1908	0.85	+0.0
2,153,798	+		PP_1908	0.85	+0.5
2,153,799	-		PP_1908	0.85	+0.1
2,153,799	-		PP_1908	0.85	-0.7
2,153,799	-		PP_1908	0.85	+1.1
2,153,799	-		PP_1908	0.85	+0.3
2,154,041	+				-0.4
2,154,042	-				+0.7
2,154,042	-				-0.9
2,154,042	-				+0.3
2,154,048	+				+0.4
2,154,189	+				-1.4
2,154,189	+				-0.2
2,154,323	+		PP_1909	0.27	+0.2
2,154,324	-		PP_1909	0.27	-0.2
2,154,426	+		PP_1909	0.44	-1.5
2,154,460	+		PP_1909	0.49	+0.5
2,154,460	+		PP_1909	0.49	-1.5
2,154,461	-		PP_1909	0.49	-3.1
2,154,461	-		PP_1909	0.49	-2.1
2,154,486	+		PP_1909	0.53	-0.9
2,154,487	-		PP_1909	0.54	-1.2
2,154,487	-		PP_1909	0.54	-1.7
2,154,518	-		PP_1909	0.59	-3.5
2,154,539	-		PP_1909	0.62	-2.9
2,154,539	-		PP_1909	0.62	-0.7
2,154,643	+		PP_1909	0.79	-3.7
2,154,721	+				-0.3
2,154,738	+				-0.1
2,155,627	+				+0.5
2,155,761	+		PP_1912	0.20	-0.3