Strain Fitness in Pseudomonas putida KT2440 around PP_1866

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,087,432	-				-0.3
2,087,442	+				+0.5
2,087,536	-				+0.1
2,087,536	-				-0.7
2,087,567	-				+1.0
2,087,788	+				+0.3
2,087,788	+				-1.0
2,087,848	-				+0.6
2,087,875	+				-0.0
2,087,902	+				+0.6
2,087,974	+				-0.1
2,087,996	+				+0.1
2,088,066	+				-0.1
2,088,077	+				+1.2
2,088,078	-				+0.0
2,088,078	-				+0.7
2,088,078	-				-1.1
2,088,313	-		PP_1866	0.15	-0.0
2,088,313	-		PP_1866	0.15	+0.5
2,088,313	-		PP_1866	0.15	+0.5
2,088,401	+		PP_1866	0.22	-0.1
2,088,401	+		PP_1866	0.22	-0.7
2,088,401	+		PP_1866	0.22	+0.5
2,088,401	+		PP_1866	0.22	-0.0
2,088,401	+		PP_1866	0.22	-0.4
2,088,402	-		PP_1866	0.22	-1.1
2,088,689	-		PP_1866	0.43	+0.2
2,088,689	-		PP_1866	0.43	+0.2
2,088,733	+		PP_1866	0.47	+0.2
2,088,733	+		PP_1866	0.47	-0.0
2,088,733	+		PP_1866	0.47	-0.0
2,088,734	-		PP_1866	0.47	-1.6
2,088,734	-		PP_1866	0.47	+0.9
2,088,856	+		PP_1866	0.56	-0.1
2,088,856	+		PP_1866	0.56	+0.7
2,088,856	+		PP_1866	0.56	-1.0
2,088,856	+		PP_1866	0.56	+1.0
2,088,857	-		PP_1866	0.56	-1.2
2,088,979	+		PP_1866	0.65	-0.1
2,089,128	-		PP_1866	0.76	+0.1
2,089,476	-				+1.3
2,089,476	-				-1.6
2,089,480	+				+0.3
2,089,480	+				-1.1
2,089,481	-				+0.5
2,089,492	+				+0.9
2,089,492	+				+0.2
2,089,492	+				+0.2
2,089,635	-				+0.5
2,089,642	-				+0.5
2,089,650	-		PP_1867	0.11	+0.2
2,089,650	-		PP_1867	0.11	+0.7
2,089,721	+		PP_1867	0.20	-0.4
2,089,727	+		PP_1867	0.21	+0.3
2,089,895	+		PP_1867	0.43	+0.7
2,089,896	-		PP_1867	0.43	-0.9
2,089,896	-		PP_1867	0.43	+0.7
2,089,925	+		PP_1867	0.47	+0.2
2,089,925	+		PP_1867	0.47	+0.5
2,089,925	+		PP_1867	0.47	-0.5
2,089,925	+		PP_1867	0.47	-0.0
2,089,925	+		PP_1867	0.47	+2.1
2,089,926	-		PP_1867	0.47	+0.7
2,089,997	+		PP_1867	0.57	+0.7
2,089,997	+		PP_1867	0.57	-0.6
2,090,279	+				-2.2
2,090,318	-				+0.5
2,090,354	-				-0.0
2,090,402	+				+0.7
2,090,437	-				-1.2
2,090,444	+				-0.9