Strain Fitness in Pseudomonas putida KT2440 around PP_1830

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,054,276	+		PP_1829	0.64	-0.8
2,054,276	+		PP_1829	0.64	+0.9
2,054,277	-		PP_1829	0.64	+0.5
2,054,557	+				-0.2
2,054,558	-				+0.3
2,054,558	-				+0.4
2,054,558	-				-1.2
2,054,634	-				+0.6
2,054,636	+				+0.5
2,054,636	+				-0.7
2,054,636	+				+0.2
2,054,636	+				-0.4
2,054,636	+				+0.7
2,054,636	+				-0.5
2,054,637	-				-0.7
2,054,637	-				-0.4
2,054,681	+				+0.2
2,054,681	+				+1.0
2,054,681	+				-0.3
2,054,681	+				+1.4
2,054,681	+				+0.2
2,054,681	+				-0.7
2,054,681	+				-0.2
2,054,682	-				-0.1
2,054,682	-				-0.3
2,054,682	-				+1.3
2,054,682	-				-0.8
2,054,682	-				-1.0
2,054,682	-				+0.3
2,054,814	+				+0.3
2,054,814	+				-0.5
2,054,814	+				-0.0
2,054,814	+				+2.6
2,054,814	+				-1.1
2,054,814	+				-0.4
2,054,814	+				-0.2
2,054,814	+				-0.5
2,054,814	+				+0.2
2,054,814	+				+0.3
2,054,814	+				+0.9
2,054,815	-				-0.3
2,054,815	-				+0.1
2,055,978	+				+0.8
2,055,990	+				-0.6
2,055,990	+				-0.9
2,055,990	+				-0.3
2,055,990	+				+0.5
2,055,991	-				-0.5
2,055,991	-				+0.6
2,055,991	-				+0.8
2,055,991	-				+1.3
2,056,000	+				-0.6
2,056,110	-				-0.2
2,056,130	+				+0.3
2,056,130	+				-1.3
2,056,131	-				+0.5
2,056,131	-				+0.3
2,056,131	-				+0.1
2,056,139	+				-0.3
2,056,139	+				+0.6
2,056,140	-				-0.2
2,056,182	-				-0.9
2,056,370	+		PP_1831	0.24	+0.9
2,056,370	+		PP_1831	0.24	-0.7
2,056,370	+		PP_1831	0.24	+0.8
2,056,371	-		PP_1831	0.24	+0.2
2,056,478	+		PP_1831	0.33	-1.0
2,056,488	+		PP_1831	0.34	-0.3
2,056,488	+		PP_1831	0.34	-0.4
2,056,489	-		PP_1831	0.34	-0.0
2,056,489	-		PP_1831	0.34	-0.2
2,056,489	-		PP_1831	0.34	-0.4
2,056,568	+		PP_1831	0.41	+0.9
2,056,712	+		PP_1831	0.54	+0.2
2,056,713	-		PP_1831	0.54	+0.2
2,056,713	-		PP_1831	0.54	+0.7
2,056,754	+		PP_1831	0.57	+1.0
2,056,754	+		PP_1831	0.57	-0.2
2,056,765	+		PP_1831	0.58	+0.6
2,056,816	-		PP_1831	0.63	-1.0
2,056,816	-		PP_1831	0.63	+1.3