Strain Fitness in Pseudomonas putida KT2440 around PP_1805

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,027,275	-				-3.9
2,027,315	+		PP_1804	0.10	-1.2
2,027,315	+		PP_1804	0.10	-1.7
2,027,315	+		PP_1804	0.10	-3.3
2,027,325	-		PP_1804	0.11	-3.3
2,027,465	-		PP_1804	0.25	-3.5
2,027,628	+		PP_1804	0.41	-4.1
2,027,628	+		PP_1804	0.41	-3.8
2,027,629	-		PP_1804	0.42	-2.6
2,027,727	+		PP_1804	0.51	-2.9
2,027,728	-		PP_1804	0.51	-2.3
2,027,771	-		PP_1804	0.56	-3.4
2,027,771	-		PP_1804	0.56	-2.4
2,027,771	-		PP_1804	0.56	-2.6
2,027,822	+		PP_1804	0.61	-3.4
2,027,823	-		PP_1804	0.61	-2.0
2,027,823	-		PP_1804	0.61	-3.7
2,027,906	-		PP_1804	0.69	-3.2
2,027,908	+		PP_1804	0.69	-3.1
2,027,909	-		PP_1804	0.69	-1.4
2,027,924	-		PP_1804	0.71	-1.2
2,027,926	+		PP_1804	0.71	-3.7
2,027,926	+		PP_1804	0.71	-3.7
2,027,939	-		PP_1804	0.72	-4.3
2,027,997	+		PP_1804	0.78	-3.0
2,027,998	-		PP_1804	0.78	-3.7
2,028,021	+		PP_1804	0.81	-2.4
2,028,022	-		PP_1804	0.81	-2.3
2,028,022	-		PP_1804	0.81	-1.6
2,028,022	-		PP_1804	0.81	-3.0
2,028,022	-		PP_1804	0.81	-0.5
2,028,027	+		PP_1804	0.81	-2.9
2,028,080	+		PP_1804	0.86	-3.3
2,028,084	-		PP_1804	0.87	-1.9
2,028,084	-		PP_1804	0.87	-2.9
2,028,119	-				-2.5
2,028,162	+				-2.7
2,028,162	+				-2.5
2,028,163	-				-2.3
2,028,176	-				-2.1
2,028,192	+				-2.0
2,028,192	+				-2.6
2,028,193	-				-3.8
2,028,193	-				-2.7
2,028,214	-				-3.1
2,028,214	-				-4.5
2,028,214	-				-3.5
2,028,214	-				-2.9
2,028,214	-				-3.5
2,028,240	+				-0.1
2,028,241	-				-1.6
2,028,241	-				-3.4
2,028,241	-				-3.7
2,028,351	+				-1.2
2,028,352	-				-3.4
2,028,355	+				-2.6
2,028,355	+				-3.0
2,028,355	+				-3.1
2,028,355	+				-3.3
2,028,355	+				-3.1
2,028,355	+				-2.9
2,028,356	-				-3.0
2,028,356	-				-4.4
2,028,356	-				-1.0
2,028,356	-				-1.5
2,028,356	-				-3.5
2,028,359	+				-3.3
2,028,359	+				-1.6
2,028,359	+				-2.9
2,028,359	+				-3.9
2,028,359	+				-3.3
2,028,359	+				-2.3
2,028,360	-				-1.7
2,028,360	-				-3.6
2,028,427	+				-3.6
2,028,441	-				-0.4
2,028,468	+		PP_1805	0.10	-2.4
2,028,469	-		PP_1805	0.10	-3.6
2,028,517	+		PP_1805	0.12	-4.2
2,028,517	+		PP_1805	0.12	-3.8
2,028,549	+		PP_1805	0.14	-3.9
2,028,550	-		PP_1805	0.14	-1.9
2,028,550	-		PP_1805	0.14	-4.0
2,028,596	+		PP_1805	0.16	-3.6
2,028,597	-		PP_1805	0.16	-3.0
2,028,642	+		PP_1805	0.18	-2.9
2,028,642	+		PP_1805	0.18	-2.2
2,028,643	-		PP_1805	0.18	-1.4
2,028,643	-		PP_1805	0.18	-0.8
2,028,643	-		PP_1805	0.18	-3.2
2,028,664	+		PP_1805	0.19	-3.7
2,028,664	+		PP_1805	0.19	-2.6
2,028,693	+		PP_1805	0.21	-3.0
2,028,693	+		PP_1805	0.21	-3.4
2,028,693	+		PP_1805	0.21	-3.6
2,028,693	+		PP_1805	0.21	+2.6
2,028,693	+		PP_1805	0.21	-3.1
2,028,694	-		PP_1805	0.21	-3.8
2,028,727	+		PP_1805	0.23	-2.0
2,028,728	-		PP_1805	0.23	-3.7
2,028,747	+		PP_1805	0.24	-4.0
2,028,784	+		PP_1805	0.25	-1.4
2,028,785	-		PP_1805	0.25	-3.8
2,028,821	-		PP_1805	0.27	-3.7
2,028,828	+		PP_1805	0.27	-4.2
2,028,828	+		PP_1805	0.27	-3.6
2,028,828	+		PP_1805	0.27	-3.0
2,028,829	-		PP_1805	0.27	-3.7
2,028,829	-		PP_1805	0.27	-2.7
2,028,829	-		PP_1805	0.27	-3.0
2,028,829	-		PP_1805	0.27	-3.6
2,028,829	-		PP_1805	0.27	-3.5
2,028,829	-		PP_1805	0.27	-4.3
2,028,829	-		PP_1805	0.27	-4.0
2,028,829	-		PP_1805	0.27	-4.5
2,028,829	-		PP_1805	0.27	-3.0
2,028,954	+		PP_1805	0.34	-3.0
2,028,954	+		PP_1805	0.34	-1.2
2,028,954	+		PP_1805	0.34	-0.4
2,028,955	-		PP_1805	0.34	-3.9
2,028,955	-		PP_1805	0.34	-2.1
2,029,285	+		PP_1805	0.50	-2.6
2,029,286	-		PP_1805	0.50	-2.7
2,029,286	-		PP_1805	0.50	-1.6
2,029,329	+		PP_1805	0.52	-2.3
2,029,330	-		PP_1805	0.52	-1.7
2,029,330	-		PP_1805	0.52	-3.4
2,029,338	+		PP_1805	0.52	-3.0
2,029,338	+		PP_1805	0.52	-3.7
2,029,338	+		PP_1805	0.52	-3.5
2,029,338	+		PP_1805	0.52	-3.0
2,029,339	-		PP_1805	0.52	-3.3
2,029,445	+		PP_1805	0.57	-3.2
2,029,445	+		PP_1805	0.57	-4.2
2,029,445	+		PP_1805	0.57	-2.6
2,029,445	+		PP_1805	0.57	-2.1
2,029,445	+		PP_1805	0.57	-3.2
2,029,446	-		PP_1805	0.57	-3.3
2,029,474	-		PP_1805	0.59	-2.2
2,029,474	-		PP_1805	0.59	-3.1
2,029,474	-		PP_1805	0.59	-2.6
2,029,529	+		PP_1805	0.61	-2.1
2,029,529	+		PP_1805	0.61	-3.7
2,029,530	-		PP_1805	0.61	-2.7
2,029,530	-		PP_1805	0.61	-2.6
2,029,532	-		PP_1805	0.61	-3.2
2,029,532	-		PP_1805	0.61	-3.4
2,029,532	-		PP_1805	0.61	-3.6
2,029,532	-		PP_1805	0.61	-1.8
2,029,532	-		PP_1805	0.61	-3.3
2,029,532	-		PP_1805	0.61	-3.7
2,029,532	-		PP_1805	0.61	-4.3
2,029,604	+		PP_1805	0.65	+0.6
2,029,604	+		PP_1805	0.65	-3.1
2,029,605	-		PP_1805	0.65	-3.6
2,029,684	+		PP_1805	0.69	-1.7
2,029,684	+				+0.6
2,029,710	+		PP_1805	0.70	-2.4
2,029,710	+		PP_1805	0.70	-3.6
2,029,710	+		PP_1805	0.70	-4.3
2,029,710	+		PP_1805	0.70	-3.1
2,029,710	+		PP_1805	0.70	-2.9
2,029,711	-		PP_1805	0.70	-3.2
2,029,711	-		PP_1805	0.70	-3.1
2,029,711	-		PP_1805	0.70	-4.1
2,029,841	+		PP_1805	0.76	-2.1
2,029,842	-		PP_1805	0.76	-3.3
2,029,842	-		PP_1805	0.76	-2.9
2,029,842	-		PP_1805	0.76	-3.3
2,029,842	-		PP_1805	0.76	-3.0
2,029,842	-		PP_1805	0.76	-3.4
2,029,862	+		PP_1805	0.77	-2.6
2,029,881	-		PP_1805	0.78	-4.1
2,029,881	-		PP_1805	0.78	-2.6
2,029,939	+		PP_1805	0.81	-2.3
2,029,939	+		PP_1805	0.81	-1.6
2,029,939	+		PP_1805	0.81	-2.5
2,029,940	-		PP_1805	0.81	-3.9
2,029,940	-		PP_1805	0.81	-3.1
2,029,940	-		PP_1805	0.81	-1.9
2,029,940	-		PP_1805	0.81	-3.5
2,030,013	-		PP_1805	0.85	-3.2
2,030,017	+		PP_1805	0.85	-2.6
2,030,017	+		PP_1805	0.85	-3.6
2,030,017	+		PP_1805	0.85	-2.3
2,030,017	+		PP_1805	0.85	-3.3
2,030,018	-		PP_1805	0.85	-4.1
2,030,018	-		PP_1805	0.85	-1.2
2,030,021	+		PP_1805	0.85	-3.1
2,030,022	-				+1.6
2,030,160	+				-4.5
2,030,161	-				-3.7
2,030,161	-				+0.0
2,030,161	-				-3.5
2,030,161	-				-3.0
2,030,189	+				-1.2
2,030,189	+				-4.0
2,030,190	-				-3.3
2,030,190	-				-2.9
2,030,190	-				-2.2
2,030,200	+				-3.2
2,030,201	-				-2.5
2,030,257	+				-2.3
2,030,257	+				-2.8
2,030,258	-				-3.3
2,030,268	+				-3.1
2,030,269	-				-2.9
2,030,521	-		PP_1806	0.15	+1.6
2,030,571	+		PP_1806	0.21	-1.5
2,030,572	-		PP_1806	0.21	-0.2
2,030,665	+		PP_1806	0.31	-1.8
2,030,666	-		PP_1806	0.31	-1.3
2,030,790	+		PP_1806	0.44	-0.5
2,030,791	-		PP_1806	0.44	-1.5
2,030,821	-		PP_1806	0.47	-0.6
2,030,969	+		PP_1806	0.62	+0.4
2,031,081	+		PP_1806	0.74	-0.2
2,031,096	+		PP_1806	0.76	-0.1
2,031,161	+		PP_1806	0.82	-1.0
2,031,229	+		PP_1806	0.90	+0.4
2,031,229	+		PP_1806	0.90	+1.2
2,031,229	+		PP_1806	0.90	+0.1
2,031,229	+		PP_1806	0.90	-0.7
2,031,229	+		PP_1806	0.90	+0.8
2,031,230	-		PP_1806	0.90	-1.0
2,031,230	-		PP_1806	0.90	-0.2