Strain Fitness in Pseudomonas putida KT2440 around PP_1797

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,017,832	+				-1.3
2,017,833	-				+0.1
2,017,833	-				+0.8
2,017,846	+				+0.2
2,017,846	+				-2.0
2,017,847	-				+0.9
2,017,867	+				-0.1
2,017,867	+				+0.5
2,017,868	-				+0.4
2,017,882	+				+0.3
2,017,882	+				-0.1
2,017,882	+				-0.5
2,017,882	+				+0.1
2,017,882	+				+0.6
2,017,882	+				+0.0
2,017,883	-				-0.5
2,017,929	+				+0.5
2,017,930	-				-0.2
2,017,966	+				+0.6
2,017,966	+				+1.6
2,017,966	+				-0.3
2,017,966	+				+0.1
2,017,966	+				-0.6
2,017,967	-				-0.8
2,017,967	-				-0.5
2,017,967	-				-0.9
2,017,967	-				+0.7
2,017,967	-				-0.1
2,017,967	-				+0.4
2,018,030	-				+0.3
2,018,085	+				+1.2
2,018,085	+				+1.3
2,018,086	-				-0.0
2,018,086	-				-0.3
2,018,086	-				+0.4
2,018,104	+				-0.2
2,018,104	+				-0.8
2,018,104	+				+0.2
2,018,104	+				-0.8
2,018,105	-				+0.1
2,018,105	-				+0.1
2,018,105	-				-0.2
2,018,105	-				-0.8
2,018,105	-				+0.8
2,018,107	-				+0.8
2,018,107	-				+0.4
2,018,107	-				+0.2
2,018,107	-				+0.6
2,018,138	+				+0.1
2,018,139	-				-0.3
2,018,367	-				+0.6
2,018,367	-				+0.1
2,018,384	-				+1.0
2,018,558	+				+0.3
2,018,559	-				-1.2
2,018,559	-				+0.0
2,018,702	-				-0.8
2,018,723	+				-1.7
2,018,724	-				-0.4
2,018,734	+				+0.4
2,018,735	-				+0.5
2,018,746	+				-0.4
2,018,746	+				-0.8
2,018,746	+				-1.2
2,019,032	+		PP_1797	0.23	-2.5
2,019,033	-		PP_1797	0.23	-0.4
2,019,071	-		PP_1797	0.26	-0.9
2,019,071	-		PP_1797	0.26	+0.3
2,019,126	+		PP_1797	0.30	+1.7
2,019,127	-		PP_1797	0.30	+0.1
2,019,136	+		PP_1797	0.31	-0.3
2,019,312	-		PP_1797	0.44	-1.6
2,019,439	+		PP_1797	0.54	-2.2
2,019,439	+		PP_1797	0.54	-0.9
2,019,440	-				+1.6
2,019,440	-		PP_1797	0.54	-2.1
2,019,674	-		PP_1797	0.71	-1.8
2,019,823	+		PP_1797	0.83	-1.6
2,019,824	-		PP_1797	0.83	-3.1
2,019,824	-		PP_1797	0.83	-0.5
2,019,878	+		PP_1797	0.87	-1.2
2,019,878	+		PP_1797	0.87	-1.6
2,019,878	+		PP_1797	0.87	-0.1
2,019,878	+		PP_1797	0.87	-0.8
2,019,878	+		PP_1797	0.87	-1.4
2,019,878	+		PP_1797	0.87	-1.8
2,019,879	-		PP_1797	0.87	-0.6
2,019,879	-		PP_1797	0.87	-2.5
2,019,881	+		PP_1797	0.87	-2.1
2,019,881	+		PP_1797	0.87	-4.2
2,019,881	+		PP_1797	0.87	-1.6
2,019,881	+		PP_1797	0.87	-1.5
2,019,881	+		PP_1797	0.87	-2.4
2,019,881	+		PP_1797	0.87	-0.6
2,019,998	+				-0.2
2,019,998	+				-1.8
2,020,110	+				-1.0
2,020,165	+				-2.8
2,020,165	+				-0.9
2,020,165	+				-1.9
2,020,166	-				-0.7
2,020,166	-				-2.7
2,020,189	+				-2.4
2,020,354	+		PP_1798	0.22	-2.0
2,020,354	+		PP_1798	0.22	-3.1
2,020,355	-		PP_1798	0.22	-2.2
2,020,355	-		PP_1798	0.22	-3.9
2,020,355	-		PP_1798	0.22	-1.2
2,020,357	-		PP_1798	0.22	-1.1
2,020,357	-		PP_1798	0.22	-1.0
2,020,357	-		PP_1798	0.22	-4.5
2,020,369	+		PP_1798	0.23	-0.8
2,020,397	-		PP_1798	0.25	-1.2
2,020,420	+		PP_1798	0.26	-2.8
2,020,485	+		PP_1798	0.31	-3.3
2,020,485	+		PP_1798	0.31	-0.5
2,020,486	-		PP_1798	0.31	-1.2
2,020,507	+		PP_1798	0.32	-1.7
2,020,508	-		PP_1798	0.32	-1.9
2,020,700	+		PP_1798	0.46	-2.4
2,020,760	+		PP_1798	0.50	-1.9
2,020,761	-		PP_1798	0.50	-2.3
2,020,894	-		PP_1798	0.60	-4.5
2,020,906	+		PP_1798	0.61	-2.3
2,020,922	+		PP_1798	0.62	-2.1
2,020,954	+		PP_1798	0.64	-1.4
2,020,954	+		PP_1798	0.64	-1.7
2,020,955	-		PP_1798	0.64	-4.4
2,020,955	-		PP_1798	0.64	-3.8
2,020,962	+		PP_1798	0.65	-1.9
2,020,962	+		PP_1798	0.65	-1.4
2,020,963	-		PP_1798	0.65	-2.5
2,020,987	+		PP_1798	0.66	-2.3
2,020,987	+		PP_1798	0.66	-3.9
2,020,987	+		PP_1798	0.66	-2.0
2,020,987	+		PP_1798	0.66	-0.4
2,020,988	-		PP_1798	0.66	-4.0
2,020,988	-		PP_1798	0.66	-4.3
2,021,020	+		PP_1798	0.69	-2.1
2,021,020	+		PP_1798	0.69	-0.5
2,021,021	-		PP_1798	0.69	-4.4
2,021,021	-		PP_1798	0.69	-3.6