Strain Fitness in Pseudomonas putida KT2440 around PP_1795

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,014,529	+		PP_1794	0.34	-0.1
2,014,530	-		PP_1794	0.34	-0.4
2,014,530	-		PP_1794	0.34	-0.5
2,014,557	+		PP_1794	0.35	+0.5
2,014,557	+		PP_1794	0.35	-0.1
2,014,558	-		PP_1794	0.36	-1.1
2,014,558	-		PP_1794	0.36	-0.1
2,014,629	-		PP_1794	0.40	-0.8
2,014,660	+		PP_1794	0.43	-1.8
2,014,686	-		PP_1794	0.44	+0.9
2,014,686	-		PP_1794	0.44	+0.2
2,014,841	+		PP_1794	0.55	-0.3
2,014,842	-		PP_1794	0.55	-0.0
2,014,842	-		PP_1794	0.55	-0.2
2,014,842	-		PP_1794	0.55	-0.9
2,015,092	-		PP_1794	0.73	-0.1
2,015,092	-		PP_1794	0.73	+0.6
2,015,095	+		PP_1794	0.73	+0.3
2,015,095	+		PP_1794	0.73	+0.8
2,015,095	+		PP_1794	0.73	+0.8
2,015,095	+		PP_1794	0.73	+0.5
2,015,095	+		PP_1794	0.73	+0.0
2,015,096	-		PP_1794	0.73	-0.4
2,015,172	+		PP_1794	0.78	+0.5
2,015,173	-		PP_1794	0.78	+0.4
2,015,189	-		PP_1794	0.79	-0.1
2,015,189	-		PP_1794	0.79	+0.8
2,015,216	+		PP_1794	0.81	+1.1
2,015,217	-		PP_1794	0.81	+0.4
2,015,217	-		PP_1794	0.81	+1.2
2,015,217	-		PP_1794	0.81	+0.5
2,015,217	-		PP_1794	0.81	-0.1
2,015,290	-		PP_1794	0.86	+1.3
2,015,290	-		PP_1794	0.86	+1.0
2,015,368	+				+1.2
2,015,369	-				+0.3
2,015,373	+				-0.2
2,015,397	+				+0.3
2,015,397	+				-0.0
2,015,397	+				-0.1
2,015,398	-				+1.4
2,015,398	-				+1.6
2,015,475	+				+0.4
2,015,480	+				+1.0
2,015,480	+				+1.0
2,015,480	+				+0.1
2,015,481	-				+0.5
2,015,492	+				+0.7
2,015,493	-				+0.9
2,015,528	+				-0.7
2,015,529	-				+0.6
2,015,529	-				+0.5
2,015,529	-				+0.9
2,015,567	+				-0.4
2,015,567	+				+1.1
2,015,592	-				+1.3
2,015,716	+		PP_1795	0.24	+0.4
2,015,716	+		PP_1795	0.24	+0.8
2,015,716	+		PP_1795	0.24	+0.6
2,015,717	-		PP_1795	0.24	+0.9
2,015,717	-		PP_1795	0.24	+1.0
2,015,717	-		PP_1795	0.24	+1.9
2,015,736	+		PP_1795	0.26	+0.7
2,015,737	-		PP_1795	0.26	+2.6
2,015,744	+		PP_1795	0.27	+1.2
2,015,745	-		PP_1795	0.27	+0.8
2,015,844	-		PP_1795	0.38	+1.1
2,015,846	-		PP_1795	0.38	+1.1
2,015,846	-		PP_1795	0.38	+1.3
2,015,846	-		PP_1795	0.38	+0.3
2,015,846	-		PP_1795	0.38	+1.0
2,015,846	-		PP_1795	0.38	+0.6
2,015,975	+		PP_1795	0.53	+1.6
2,015,976	-		PP_1795	0.53	+0.9
2,016,012	-		PP_1795	0.57	+1.4
2,016,047	-		PP_1795	0.61	+1.3
2,016,106	-		PP_1795	0.68	+1.5
2,016,106	-		PP_1795	0.68	+1.7
2,016,106	-		PP_1795	0.68	+1.5
2,016,122	+		PP_1795	0.69	+1.1
2,016,122	+		PP_1795	0.69	+1.9
2,016,123	-		PP_1795	0.70	+2.9
2,016,123	-		PP_1795	0.70	+1.6
2,016,123	-		PP_1795	0.70	+1.0
2,016,123	-		PP_1795	0.70	+1.8
2,016,123	-		PP_1795	0.70	+1.3
2,016,123	-		PP_1795	0.70	+0.4
2,016,123	-		PP_1795	0.70	+2.0
2,016,123	-		PP_1795	0.70	+1.3
2,016,123	-		PP_1795	0.70	+2.1
2,016,127	+		PP_1795	0.70	+0.6
2,016,127	+		PP_1795	0.70	+0.7
2,016,127	+		PP_1795	0.70	+1.1
2,016,128	-		PP_1795	0.70	+1.7
2,016,128	-		PP_1795	0.70	+2.2
2,016,128	-		PP_1795	0.70	+2.2
2,016,276	+		PP_1795	0.87	+0.5
2,016,319	+				+0.7
2,016,319	+				+0.1
2,016,319	+				+1.1
2,016,319	+				+1.5
2,016,320	-				+0.9
2,016,320	-				+1.9
2,016,320	-				+1.2
2,016,320	-				+1.8
2,016,320	-				+1.7
2,016,320	-				+1.2
2,016,320	-				+1.4
2,016,386	+				+1.7
2,016,386	+				-0.3
2,016,386	+				+1.0
2,016,386	+				+1.6
2,016,386	+				+1.3
2,016,386	+				+0.1
2,016,386	+				+0.5
2,016,387	-				+1.9
2,016,401	+				+0.6
2,016,401	+				+1.7
2,016,402	-				+0.9
2,016,413	-				+1.3
2,016,429	+				+1.2
2,016,430	-				+0.5
2,016,430	-				-0.1
2,016,434	-				+0.5
2,016,434	-				+3.9
2,016,434	-				+1.2
2,016,434	-				+1.2
2,016,546	-				-0.7
2,016,882	+				+1.4
2,016,882	+				+0.0
2,016,883	-				-0.7
2,016,883	-				+0.1
2,016,912	+				-0.4
2,016,913	-				+1.2
2,016,919	-				+0.1
2,016,919	-				+0.9
2,016,943	-				-0.1
2,016,970	-				-0.6
2,017,025	+				-0.0
2,017,025	+				-0.4
2,017,025	+				-2.8
2,017,025	+				+0.0
2,017,026	-				+0.3
2,017,026	-				+0.3
2,017,026	-				+0.9
2,017,026	-				-1.6
2,017,026	-				+0.7
2,017,033	-				+1.2
2,017,039	+				-0.5
2,017,039	+				+0.1
2,017,040	-				+1.0
2,017,040	-				-0.0
2,017,040	-				+0.3
2,017,133	+				-0.1
2,017,134	-				+0.4
2,017,173	+				+0.3
2,017,174	-				+0.1
2,017,174	-				+0.7
2,017,174	-				-0.6
2,017,174	-				+1.2
2,017,175	+				-0.1
2,017,175	+				-0.3
2,017,175	+				-0.8
2,017,176	-				+1.2
2,017,176	-				+1.0
2,017,182	+				-0.2
2,017,182	+				-0.5
2,017,182	+				+0.1
2,017,183	-				+1.2
2,017,183	-				+0.0
2,017,187	+				-2.6
2,017,187	+				-1.0
2,017,187	+				-0.6
2,017,187	+				-0.7
2,017,187	+				-0.5
2,017,187	+				-0.8
2,017,187	+				-0.3
2,017,188	-				+1.0
2,017,188	-				+1.4
2,017,188	-				-1.1
2,017,188	-				-0.5
2,017,188	-				+0.4
2,017,188	-				-0.3
2,017,188	-				+1.7
2,017,188	-				+1.0
2,017,188	-				+0.1
2,017,214	-				+0.9
2,017,261	+				-0.8
2,017,284	+				-1.6
2,017,284	+				-0.2
2,017,293	+				+0.7
2,017,293	+				-1.4
2,017,356	-				+0.1
2,017,356	-				+0.1
2,017,356	-				-0.9
2,017,357	+				-1.1
2,017,357	+				-0.8
2,017,357	+				-0.6
2,017,374	+				-0.3