Strain Fitness in Pseudomonas putida KT2440 around PP_1789

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
2,005,183	-		PP_1788	0.48	-0.1
2,005,420	-		PP_1788	0.70	-0.7
2,005,515	-		PP_1788	0.79	+2.0
2,005,742	+				+0.5
2,005,924	-				-1.8
2,006,355	+		PP_1789	0.54	-2.7
2,006,368	-		PP_1789	0.56	-3.1
2,006,368	-		PP_1789	0.56	-1.6
2,006,369	+		PP_1789	0.56	-2.6
2,006,369	+		PP_1789	0.56	-1.5
2,006,407	+		PP_1789	0.62	-1.3
2,006,427	+		PP_1789	0.64	-2.1
2,006,457	+		PP_1789	0.69	-2.1
2,006,569	+		PP_1789	0.85	-0.5
2,006,591	+		PP_1789	0.88	-0.3
2,006,793	-		PP_1790	0.18	-1.9
2,006,806	+		PP_1790	0.20	-1.2
2,006,838	-		PP_1790	0.25	-0.6
2,007,207	-		PP_1790	0.78	-1.2
2,007,390	+				-1.3
2,007,398	+				-0.5
2,007,531	+		PP_1791	0.11	-0.8
2,007,563	+		PP_1791	0.13	-0.3
2,007,564	-		PP_1791	0.13	-0.6
2,007,569	-				+0.0
2,007,574	+		PP_1791	0.13	+1.1
2,007,657	+		PP_1791	0.19	-0.4