Strain Fitness in Pseudomonas putida KT2440 around PP_1775

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
1,981,183	-				-3.3
1,981,221	-				-3.5
1,981,221	-				-4.3
1,981,224	+				-3.7
1,981,225	-				+0.6
1,981,225	-				-4.8
1,981,231	+				-3.7
1,981,271	+				-3.3
1,981,272	-				-2.3
1,981,360	+				-3.2
1,981,387	+				-3.0
1,981,387	+				-3.9
1,981,387	+				-3.7
1,981,388	-				-4.1
1,981,388	-				-5.0
1,981,726	+		PP_1774	0.30	-5.1
1,981,727	-		PP_1774	0.30	-3.0
1,981,727	-		PP_1774	0.30	-3.7
1,981,945	-				-2.5
1,981,945	-				-4.3
1,981,963	+				-3.8
1,981,963	+				-3.4
1,981,964	-				-4.2
1,981,964	-				-4.1
1,981,964	-				-3.7
1,981,964	-				-2.8
1,981,966	+				-4.9
1,981,967	-				-4.2
1,981,982	+				-5.4
1,981,982	+				-4.4
1,981,983	-				-4.0
1,981,983	-				-1.4
1,981,983	-				-3.0
1,981,983	-				-3.7
1,982,007	+				-3.0
1,982,008	-				-4.3
1,982,008	-				-3.8
1,982,008	-				-2.8
1,982,010	+				-4.8
1,982,011	-				-4.6
1,982,011	-				-4.6
1,982,052	+				-5.1
1,982,304	-		PP_1775	0.18	-0.0
1,982,359	-		PP_1775	0.22	-4.2
1,982,359	-		PP_1775	0.22	-3.9
1,982,401	-		PP_1775	0.25	-3.3
1,982,423	+		PP_1775	0.26	-3.7
1,982,424	-		PP_1775	0.26	-4.2
1,982,487	-		PP_1775	0.31	-2.8
1,982,526	+		PP_1775	0.33	+0.7
1,982,527	-		PP_1775	0.33	-4.4
1,982,527	-		PP_1775	0.33	-4.2
1,982,540	+		PP_1775	0.34	-4.4
1,982,569	-		PP_1775	0.36	-5.1
1,982,569	-		PP_1775	0.36	-0.4
1,982,664	+		PP_1775	0.43	-2.8
1,982,796	+		PP_1775	0.52	-4.3
1,983,057	+		PP_1775	0.70	+1.8
1,983,057	+		PP_1775	0.70	+2.0
1,983,132	+		PP_1775	0.76	+2.2
1,983,133	-		PP_1775	0.76	-3.7
1,983,212	-		PP_1775	0.81	-1.7
1,983,271	-		PP_1775	0.85	-1.6
1,983,271	-		PP_1775	0.85	-3.5
1,983,450	-				-3.9
1,983,470	+				+1.8
1,983,470	+				+2.1
1,983,470	+				+1.2
1,983,471	-				-0.9
1,983,471	-				-3.3
1,983,471	-				-4.1
1,983,471	-				-4.9
1,983,471	-				-3.2
1,983,481	-				-2.2
1,983,564	+				+3.6
1,983,565	-				-3.9
1,983,625	+				+2.8
1,983,625	+				+1.9
1,983,625	+				+1.8
1,983,625	+				+2.5
1,983,625	+				+2.3
1,983,626	-				-2.8
1,983,626	-				-3.0
1,983,626	-				-2.7
1,983,644	+				-4.5
1,983,644	+				-3.1
1,983,650	-				-3.5
1,983,710	-				-3.0
1,983,710	-				-3.0
1,983,713	+				-3.4
1,983,714	-				-3.6
1,983,748	+				-4.5
1,983,749	-				+0.0
1,983,751	+				-1.1
1,983,751	+				-4.5
1,983,751	+				-4.2
1,983,752	-				-4.1
1,983,752	-				-3.4
1,983,756	+				-3.1
1,983,756	+				-2.1
1,983,756	+				-3.8
1,983,756	+				-3.4
1,983,757	-				-2.1
1,983,757	-				-2.5
1,983,757	-				-3.6
1,983,865	+				-3.6
1,983,866	-				-2.3
1,984,053	+		PP_1776	0.17	-3.7
1,984,053	+		PP_1776	0.17	-4.2
1,984,053	+		PP_1776	0.17	-2.2
1,984,253	+		PP_1776	0.31	+1.6
1,984,254	-		PP_1776	0.31	-2.0
1,984,254	-		PP_1776	0.31	-2.9
1,984,264	-		PP_1776	0.31	-2.7
1,984,284	+		PP_1776	0.33	-3.2
1,984,284	+		PP_1776	0.33	-3.2
1,984,285	-		PP_1776	0.33	-2.5
1,984,324	+		PP_1776	0.36	-1.9
1,984,325	-		PP_1776	0.36	-3.7
1,984,325	-		PP_1776	0.36	-3.6
1,984,374	+		PP_1776	0.39	-4.4
1,984,375	-		PP_1776	0.39	-3.6
1,984,375	-		PP_1776	0.39	-4.0
1,984,375	-		PP_1776	0.39	-3.1
1,984,375	-		PP_1776	0.39	-1.8
1,984,375	-		PP_1776	0.39	-2.5
1,984,392	+		PP_1776	0.40	+0.0
1,984,393	-		PP_1776	0.40	-1.8
1,984,455	+		PP_1776	0.45	-3.4
1,984,455	+		PP_1776	0.45	-3.7
1,984,455	+		PP_1776	0.45	-1.4
1,984,456	-				+1.6
1,984,456	-		PP_1776	0.45	-4.3