Strain Fitness in Pseudomonas putida KT2440 around PP_1735

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
1,933,774	-				-1.0
1,933,812	-				+1.4
1,933,812	-				+1.0
1,933,815	+				+1.0
1,933,815	+				+3.2
1,933,816	-				-0.4
1,933,828	-				-0.8
1,933,858	-				+1.4
1,934,006	+				+0.6
1,934,007	-		PP_1734	0.17	-1.4
1,934,063	-		PP_1734	0.24	-0.1
1,934,143	+		PP_1734	0.34	-0.7
1,934,143	+		PP_1734	0.34	-1.2
1,934,143	+		PP_1734	0.34	+0.5
1,934,144	-		PP_1734	0.34	-0.4
1,934,144	-		PP_1734	0.34	+1.6
1,934,144	-				+0.6
1,934,144	-		PP_1734	0.34	-2.0
1,934,174	+		PP_1734	0.38	-1.1
1,934,174	+		PP_1734	0.38	-1.2
1,934,460	-		PP_1734	0.72	+0.6
1,934,460	-		PP_1734	0.72	+0.0
1,934,460	-		PP_1734	0.72	+1.9
1,934,549	+		PP_1734	0.83	-1.2
1,934,549	+		PP_1734	0.83	-0.4
1,934,550	-		PP_1734	0.83	+0.4
1,934,624	+				-2.8
1,934,625	-				+2.2
1,934,625	-				+1.8
1,934,657	+				-0.7
1,934,657	+				-2.3
1,934,658	-				+1.3
1,934,658	-				+2.4
1,934,660	-				+2.0
1,934,660	-				+2.5
1,934,760	+				+2.9
1,935,652	-				-0.8
1,935,681	+				-0.1
1,935,682	-				+2.1
1,935,682	-				+0.4
1,935,756	+				+3.2
1,935,757	-				+1.7
1,936,177	-		PP_1736	0.42	+1.4
1,936,499	+		PP_1736	0.70	+0.5
1,936,500	-		PP_1736	0.70	+0.9
1,936,500	-		PP_1736	0.70	+0.2