Strain Fitness in Pseudomonas putida KT2440 around PP_1627

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
1,824,467	+		PP_1626	0.69	-4.3
1,824,467	+		PP_1626	0.69	-3.5
1,824,467	+		PP_1626	0.69	-2.9
1,824,468	-		PP_1626	0.69	-0.2
1,824,468	-		PP_1626	0.69	-0.5
1,824,468	-		PP_1626	0.69	-2.3
1,824,535	+		PP_1626	0.72	-3.4
1,824,535	+		PP_1626	0.72	-3.9
1,824,535	+		PP_1626	0.72	-3.6
1,824,536	-		PP_1626	0.72	-1.0
1,824,536	-		PP_1626	0.72	-1.5
1,824,536	-		PP_1626	0.72	-3.0
1,824,822	+		PP_1626	0.83	-3.3
1,825,027	+				-2.9
1,825,028	-				-0.4
1,825,028	-				-0.9
1,825,154	-				-1.8
1,825,214	-				-0.5
1,825,263	+				-1.3
1,825,264	-				-2.6
1,825,264	-				+0.4
1,825,392	+				+1.0
1,825,392	+				+0.6
1,825,393	-				-4.0
1,825,393	-				-3.8
1,825,462	+				-4.2
1,825,463	-				-3.4
1,825,463	-				-3.6
1,825,466	+				-5.0
1,825,466	+				-4.3
1,825,467	-				-4.6
1,825,467	-				-3.6
1,825,492	+				-3.4
1,825,511	-				-3.7
1,825,511	-				-4.8
1,825,590	+		PP_1627	0.16	-4.8
1,825,758	+		PP_1627	0.32	-3.0
1,825,763	+		PP_1627	0.32	-2.7
1,825,864	+		PP_1627	0.41	-1.0
1,825,864	+				-0.7
1,825,864	+		PP_1627	0.41	-4.4
1,825,864	+		PP_1627	0.41	-4.3
1,825,932	+		PP_1627	0.47	-3.5
1,825,933	-		PP_1627	0.48	-4.8
1,826,014	+		PP_1627	0.55	-4.9
1,826,014	+		PP_1627	0.55	-4.6
1,826,015	-		PP_1627	0.55	-4.6
1,826,015	-		PP_1627	0.55	-3.7
1,826,031	+		PP_1627	0.57	-3.6
1,826,032	-		PP_1627	0.57	-3.2
1,826,032	-		PP_1627	0.57	-4.2
1,826,032	-		PP_1627	0.57	-2.4
1,826,107	+		PP_1627	0.63	-4.0
1,826,125	+		PP_1627	0.65	-2.7
1,826,125	+		PP_1627	0.65	-4.2
1,826,125	+		PP_1627	0.65	-3.9
1,826,125	+		PP_1627	0.65	-3.1
1,826,273	+		PP_1627	0.79	-5.2
1,826,274	-		PP_1627	0.79	-3.6
1,826,312	-		PP_1627	0.82	-4.2
1,826,338	+		PP_1627	0.85	-2.8
1,826,339	-		PP_1627	0.85	-1.4
1,826,528	+				-0.2
1,826,528	+				-0.8
1,826,529	-				-2.2
1,826,529	-				-1.6
1,826,575	+				-1.0
1,826,575	+				-0.6
1,826,576	-				-3.8
1,826,679	+		PP_1628	0.24	-0.5
1,826,680	-		PP_1628	0.25	-2.7
1,826,680	-		PP_1628	0.25	-1.4
1,826,711	+		PP_1628	0.31	-0.2
1,826,720	+		PP_1628	0.33	-0.3
1,826,720	+		PP_1628	0.33	+0.2
1,826,720	+				+2.3
1,826,720	+		PP_1628	0.33	+0.2
1,826,721	-		PP_1628	0.33	-1.5
1,827,024	+				+0.9
1,827,041	+				-0.1
1,827,098	-				-1.2
1,827,287	+		PP_1629	0.13	+1.2
1,827,336	+		PP_1629	0.18	-1.0
1,827,336	+		PP_1629	0.18	-0.0
1,827,337	-		PP_1629	0.18	-2.8
1,827,407	+		PP_1629	0.24	-0.7
1,827,407	+		PP_1629	0.24	-2.4
1,827,407	+		PP_1629	0.24	-1.0
1,827,408	-		PP_1629	0.24	-1.7
1,827,450	+		PP_1629	0.28	-2.0
1,827,450	+		PP_1629	0.28	-2.2