Strain Fitness in Pseudomonas putida KT2440 around PP_1626

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
1,821,814	-				+0.2
1,821,829	+				+0.1
1,821,829	+				-0.4
1,821,865	-				-1.3
1,821,887	+				-0.2
1,821,943	+				-0.6
1,821,958	-				-0.0
1,822,020	+				-0.2
1,822,214	+				-0.8
1,822,623	-				+0.4
1,822,623	-				+0.6
1,822,669	-				-0.3
1,822,669	-				-0.3
1,822,669	-				+0.0
1,822,703	-				-0.5
1,822,705	-				+0.0
1,823,075	-		PP_1626	0.15	-0.2
1,823,075	-				-1.0
1,823,075	-		PP_1626	0.15	-0.1
1,823,095	+		PP_1626	0.16	-1.6
1,823,095	+		PP_1626	0.16	-0.6
1,823,095	+		PP_1626	0.16	-2.9
1,823,096	-		PP_1626	0.16	-0.4
1,823,096	-		PP_1626	0.16	-0.8
1,823,390	-		PP_1626	0.28	-2.0
1,823,390	-		PP_1626	0.28	-0.7
1,823,390	-		PP_1626	0.28	-1.3
1,823,438	+		PP_1626	0.29	-2.4
1,823,439	-		PP_1626	0.29	+1.0
1,823,439	-		PP_1626	0.29	+0.3
1,823,674	+		PP_1626	0.39	-3.6
1,823,674	+		PP_1626	0.39	-4.4
1,823,675	-		PP_1626	0.39	-2.5
1,823,791	+		PP_1626	0.43	-1.9
1,823,791	+		PP_1626	0.43	-3.6
1,823,792	-		PP_1626	0.43	-1.0
1,823,792	-		PP_1626	0.43	-1.0
1,823,792	-		PP_1626	0.43	-0.7
1,823,840	-		PP_1626	0.45	-1.5
1,823,840	-		PP_1626	0.45	-0.2
1,823,857	+		PP_1626	0.46	-1.9
1,824,068	+		PP_1626	0.54	-1.6
1,824,259	+		PP_1626	0.61	-3.3
1,824,260	-		PP_1626	0.61	-2.1
1,824,260	-		PP_1626	0.61	-1.9
1,824,467	+		PP_1626	0.69	-4.3
1,824,467	+		PP_1626	0.69	-3.5
1,824,467	+		PP_1626	0.69	-2.9
1,824,468	-		PP_1626	0.69	-0.2
1,824,468	-		PP_1626	0.69	-0.5
1,824,468	-		PP_1626	0.69	-2.3
1,824,535	+		PP_1626	0.72	-3.4
1,824,535	+		PP_1626	0.72	-3.9
1,824,535	+		PP_1626	0.72	-3.6
1,824,536	-		PP_1626	0.72	-1.0
1,824,536	-		PP_1626	0.72	-1.5
1,824,536	-		PP_1626	0.72	-3.0
1,824,822	+		PP_1626	0.83	-3.3
1,825,027	+				-2.9
1,825,028	-				-0.4
1,825,028	-				-0.9
1,825,154	-				-1.8
1,825,214	-				-0.5
1,825,263	+				-1.3
1,825,264	-				-2.6
1,825,264	-				+0.4
1,825,392	+				+1.0
1,825,392	+				+0.6
1,825,393	-				-4.0
1,825,393	-				-3.8
1,825,462	+				-4.2
1,825,463	-				-3.4
1,825,463	-				-3.6
1,825,466	+				-5.0
1,825,466	+				-4.3
1,825,467	-				-4.6
1,825,467	-				-3.6
1,825,492	+				-3.4
1,825,511	-				-3.7
1,825,511	-				-4.8
1,825,590	+		PP_1627	0.16	-4.8
1,825,758	+		PP_1627	0.32	-3.0
1,825,763	+		PP_1627	0.32	-2.7
1,825,864	+		PP_1627	0.41	-1.0
1,825,864	+				-0.7
1,825,864	+		PP_1627	0.41	-4.4
1,825,864	+		PP_1627	0.41	-4.3
1,825,932	+		PP_1627	0.47	-3.5
1,825,933	-		PP_1627	0.48	-4.8
1,826,014	+		PP_1627	0.55	-4.9
1,826,014	+		PP_1627	0.55	-4.6
1,826,015	-		PP_1627	0.55	-4.6
1,826,015	-		PP_1627	0.55	-3.7
1,826,031	+		PP_1627	0.57	-3.6
1,826,032	-		PP_1627	0.57	-3.2
1,826,032	-		PP_1627	0.57	-4.2
1,826,032	-		PP_1627	0.57	-2.4
1,826,107	+		PP_1627	0.63	-4.0
1,826,125	+		PP_1627	0.65	-2.7
1,826,125	+		PP_1627	0.65	-4.2
1,826,125	+		PP_1627	0.65	-3.9
1,826,125	+		PP_1627	0.65	-3.1