Strain Fitness in Pseudomonas putida KT2440 around PP_1601

Experiment: P. put PUT 10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1599 and PP_1600 are separated by 44 nucleotidesPP_1600 and PP_1601 are separated by 1 nucleotidesPP_1601 and PP_1602 are separated by 63 nucleotidesPP_1602 and PP_1603 overlap by 4 nucleotides PP_1599: PP_1599 - outer membrane protein assembly factor, at 1,792,783 to 1,795,143 _1599 PP_1600: PP_1600 - Skp-like protein, at 1,795,188 to 1,795,691 _1600 PP_1601: PP_1601 - UDP-3-O-acylglucosamine N-acyltransferase, at 1,795,693 to 1,796,748 _1601 PP_1602: PP_1602 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ, at 1,796,812 to 1,797,303 _1602 PP_1603: PP_1603 - Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 1,797,300 to 1,798,076 _1603 Position (kb) 1795 1796 1797Strain fitness (log2 ratio) -1 0 1 2at 1795.141 kb on + strandat 1795.141 kb on + strandat 1795.141 kb on + strandat 1795.141 kb on + strandat 1795.172 kb on + strandat 1795.644 kb on + strandat 1795.692 kb on + strandat 1796.749 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1
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1,795,141 + +0.9
1,795,141 + +1.3
1,795,141 + +2.6
1,795,141 + -0.2
1,795,172 + -0.2
1,795,644 + +0.5
1,795,692 + +0.8
1,796,749 + +1.5

Or see this region's nucleotide sequence