Strain Fitness in Pseudomonas putida KT2440 around PP_1442

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
1,640,960	-				-1.5
1,641,048	+		PP_1441	0.14	-1.5
1,641,049	-		PP_1441	0.14	-0.5
1,641,049	-		PP_1441	0.14	-0.7
1,641,108	-		PP_1441	0.22	-0.9
1,641,337	+		PP_1441	0.52	-0.6
1,641,338	-		PP_1441	0.53	-0.4
1,641,386	+		PP_1441	0.59	-1.2
1,641,420	+		PP_1441	0.64	+0.7
1,641,420	+		PP_1441	0.64	+0.0
1,641,506	+				+0.3
1,641,506	+		PP_1441	0.75	-0.1
1,641,732	-				-0.3
1,641,732	-				-0.9
1,641,732	-				-0.3
1,641,848	-		PP_1442	0.17	-0.7
1,641,848	-		PP_1442	0.17	-0.5
1,641,947	-		PP_1442	0.42	+0.3
1,641,973	-		PP_1442	0.49	-0.3
1,641,973	-		PP_1442	0.49	-0.3
1,642,034	+		PP_1442	0.65	-0.2
1,642,502	-				-0.8
1,642,637	-		PP_1443	0.13	-0.4
1,642,709	+		PP_1443	0.16	-3.1
1,642,709	+		PP_1443	0.16	+0.4
1,642,709	+		PP_1443	0.16	+0.3
1,642,710	-		PP_1443	0.16	+0.3
1,642,710	-		PP_1443	0.16	+0.7
1,642,710	-		PP_1443	0.16	-0.0
1,642,710	-		PP_1443	0.16	-0.4
1,642,710	-		PP_1443	0.16	+0.8
1,642,871	-		PP_1443	0.23	-0.1
1,642,871	-		PP_1443	0.23	+0.1
1,642,932	+		PP_1443	0.25	-0.6
1,642,933	-		PP_1443	0.25	-0.4
1,642,933	-		PP_1443	0.25	+0.6
1,642,933	-		PP_1443	0.25	-0.1
1,642,933	-		PP_1443	0.25	-1.1
1,642,933	-		PP_1443	0.25	-0.4
1,643,031	-		PP_1443	0.29	-0.7
1,643,031	-		PP_1443	0.29	+0.2