Strain Fitness in Pseudomonas putida KT2440 around PP_1326

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
1,511,160	+		PP_1325	0.78	+2.1
1,511,160	+		PP_1325	0.78	+1.2
1,511,160	+		PP_1325	0.78	+1.3
1,511,160	+		PP_1325	0.78	-0.5
1,511,160	+		PP_1325	0.78	+0.1
1,511,161	-		PP_1325	0.78	+1.0
1,511,161	-		PP_1325	0.78	+1.2
1,511,161	-		PP_1325	0.78	+1.7
1,511,161	-		PP_1325	0.78	+1.8
1,511,367	+		PP_1325	0.89	+1.7
1,511,474	+				+1.4
1,511,474	+				+0.9
1,511,474	+				+1.2
1,511,475	-				+2.1
1,511,568	+				+1.1
1,511,568	+				+0.8
1,511,568	+				+0.9
1,511,568	+				+1.3
1,511,568	+				+0.9
1,511,568	+				+0.1
1,511,569	-				+1.3
1,511,569	-				+1.7
1,511,569	-				-0.5
1,511,580	+				+0.8
1,511,580	+				+0.8
1,511,606	+				+1.4
1,511,606	+				+0.9
1,511,607	-				+0.6
1,511,607	-				+1.9
1,511,653	+				+0.2
1,511,654	-				+0.8
1,511,655	+				+1.4
1,511,655	+				+0.4
1,511,655	+				+0.6
1,511,655	+				+0.6
1,511,655	+				+0.8
1,511,655	+				+2.2
1,511,655	+				+1.7
1,511,655	+				+0.4
1,511,655	+				+1.2
1,511,656	-				+1.1
1,511,656	-				+1.4
1,511,656	-				+0.7
1,511,656	-				+0.3
1,511,656	-				+1.2
1,511,656	-				+1.1
1,511,656	-				+1.4
1,511,656	-				+1.3
1,511,715	+				+0.3
1,511,798	+				-0.1
1,511,798	+				-3.3
1,511,798	+				-4.5
1,511,798	+				-2.5
1,511,798	+				-4.0
1,511,799	-				-1.8
1,511,799	-				-4.1
1,511,799	-				-3.8
1,511,799	-				-3.5
1,511,799	-				-4.7
1,511,799	-				-3.9
1,512,261	-		PP_1326	0.58	-0.8
1,512,310	-		PP_1326	0.64	-4.5
1,512,519	+		PP_1326	0.88	-4.3
1,512,519	+		PP_1326	0.88	-3.4
1,512,593	+				-3.6
1,512,593	+				-2.9
1,512,593	+				-5.0
1,512,594	-				-3.2
1,512,594	-				-2.9
1,512,594	-				-2.2
1,512,626	+				+1.8
1,512,642	+				+1.1
1,512,642	+				+1.3
1,512,643	-				+1.3
1,513,095	+				-0.7
1,513,138	+				+0.5
1,513,235	+				-0.5
1,513,250	+				-0.5
1,513,299	+				+0.7
1,513,299	+				-0.1
1,513,299	+				-0.3
1,513,301	+				+0.5
1,513,301	+				+0.1
1,513,357	+				-0.1
1,513,546	+		PP_1328	0.39	+1.2
1,513,546	+		PP_1328	0.39	+0.4
1,513,546	+		PP_1328	0.39	-0.1
1,513,546	+				+2.1