Strain Fitness in Pseudomonas putida KT2440 around PP_1287

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
1,470,385	+		PP_1286	0.22	+1.2
1,470,673	-		PP_1286	0.46	-0.4
1,470,748	+		PP_1286	0.53	+0.9
1,470,748	+		PP_1286	0.53	+0.3
1,470,748	+		PP_1286	0.53	+0.9
1,470,749	-		PP_1286	0.53	-1.6
1,470,749	-		PP_1286	0.53	-0.2
1,470,749	-		PP_1286	0.53	+0.6
1,470,749	-		PP_1286	0.53	+0.4
1,470,757	+		PP_1286	0.54	-0.4
1,470,757	+		PP_1286	0.54	+0.4
1,470,758	-		PP_1286	0.54	+1.4
1,470,758	-		PP_1286	0.54	-1.1
1,470,758	-		PP_1286	0.54	-0.3
1,470,758	-		PP_1286	0.54	+0.5
1,471,036	+		PP_1286	0.77	+0.2
1,471,037	-		PP_1286	0.78	+1.2
1,471,233	+				+0.8
1,471,293	-				-0.5
1,471,496	+		PP_1287	0.11	-0.3
1,471,497	-		PP_1287	0.11	-3.1
1,471,497	-		PP_1287	0.11	-1.7
1,471,497	-		PP_1287	0.11	-0.8
1,471,497	-		PP_1287	0.11	-2.4
1,471,530	-				-1.2
1,471,530	-		PP_1287	0.13	-1.9
1,471,530	-		PP_1287	0.13	-3.2
1,471,533	-		PP_1287	0.13	-0.9
1,471,533	-		PP_1287	0.13	+0.1
1,471,548	-		PP_1287	0.14	-1.2
1,471,558	+		PP_1287	0.15	-1.3
1,471,559	-				-0.2
1,471,559	-		PP_1287	0.15	-1.0
1,471,559	-		PP_1287	0.15	-2.3
1,471,625	+		PP_1287	0.19	+0.5
1,471,625	+		PP_1287	0.19	-1.2
1,471,625	+		PP_1287	0.19	-0.1
1,471,625	+		PP_1287	0.19	-1.8
1,471,808	+		PP_1287	0.32	-0.4
1,471,808	+		PP_1287	0.32	-0.3
1,471,808	+		PP_1287	0.32	-0.8
1,471,809	-				-0.6
1,471,886	+		PP_1287	0.37	-1.0
1,471,886	+		PP_1287	0.37	+0.3
1,471,886	+		PP_1287	0.37	-0.9
1,471,887	-		PP_1287	0.37	-0.3
1,471,887	-		PP_1287	0.37	+0.0
1,472,188	+		PP_1287	0.57	-0.2
1,472,390	+		PP_1287	0.71	-0.4
1,472,498	+		PP_1287	0.78	-0.3
1,472,499	-		PP_1287	0.78	+0.2
1,472,499	-		PP_1287	0.78	+0.4
1,472,499	-		PP_1287	0.78	+0.8
1,472,526	+		PP_1287	0.80	-0.3
1,472,549	+		PP_1287	0.81	-1.0
1,472,549	+		PP_1287	0.81	+0.3
1,472,550	-		PP_1287	0.81	-0.3
1,472,575	-		PP_1287	0.83	+0.4
1,472,603	+		PP_1287	0.85	+0.9
1,472,603	+		PP_1287	0.85	+0.4
1,472,610	-		PP_1287	0.85	-0.6
1,472,618	+		PP_1287	0.86	+0.1
1,472,663	+		PP_1287	0.89	-0.5
1,472,664	-		PP_1287	0.89	-0.3
1,472,664	-		PP_1287	0.89	-0.3
1,472,724	+				-0.7
1,472,724	+				-0.5
1,472,768	+				-0.7
1,472,768	+				+0.5
1,472,769	-				-0.3
1,472,769	-				+0.0
1,472,905	+				-0.6
1,473,118	+		PP_1288	0.16	+0.4
1,473,118	+		PP_1288	0.16	+0.0
1,473,118	+		PP_1288	0.16	-0.6
1,473,166	+		PP_1288	0.20	+0.1
1,473,166	+		PP_1288	0.20	-0.1
1,473,167	-		PP_1288	0.20	+0.6
1,473,167	-				+0.4
1,473,167	-		PP_1288	0.20	+0.1
1,473,167	-		PP_1288	0.20	-0.1
1,473,402	+		PP_1288	0.38	-0.3
1,473,451	+		PP_1288	0.42	+0.6
1,473,451	+		PP_1288	0.42	-0.8
1,473,451	+		PP_1288	0.42	-0.3
1,473,451	+		PP_1288	0.42	-0.3
1,473,452	-		PP_1288	0.42	-0.6
1,473,452	-		PP_1288	0.42	-1.1
1,473,452	-		PP_1288	0.42	-0.3
1,473,452	-		PP_1288	0.42	-0.9
1,473,454	+		PP_1288	0.42	-0.5
1,473,589	+		PP_1288	0.52	-0.4
1,473,589	+		PP_1288	0.52	+0.1
1,473,589	+		PP_1288	0.52	+0.7
1,473,590	-		PP_1288	0.52	-0.3
1,473,590	-		PP_1288	0.52	+0.7
1,473,590	-		PP_1288	0.52	-0.5
1,473,590	-		PP_1288	0.52	-0.5
1,473,650	-		PP_1288	0.57	-0.2
1,473,650	-		PP_1288	0.57	+0.5
1,473,718	+		PP_1288	0.62	+1.3
1,473,718	+		PP_1288	0.62	+1.0
1,473,718	+		PP_1288	0.62	+2.0
1,473,718	+		PP_1288	0.62	+0.5