Strain Fitness in Pseudomonas putida KT2440 around PP_1279

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
1,459,429	+		PP_1277	0.88	-1.4
1,459,429	+		PP_1277	0.88	+0.1
1,459,430	-		PP_1277	0.88	+0.4
1,459,495	+				-0.6
1,459,495	+				-0.0
1,459,495	+				-0.2
1,459,496	-				+1.4
1,459,496	-				-0.1
1,459,496	-				+0.3
1,459,583	+				+0.1
1,459,608	+				-1.1
1,459,608	+				-0.0
1,459,609	-				-1.1
1,459,609	-				+0.0
1,459,638	+				-0.0
1,459,690	+				-0.0
1,459,691	-				-1.2
1,459,694	+				+0.6
1,459,694	+				-0.3
1,459,763	+		PP_1278	0.21	-0.5
1,459,764	-		PP_1278	0.21	-1.0
1,459,764	-		PP_1278	0.21	-0.5
1,459,764	-		PP_1278	0.21	-1.1
1,459,976	+		PP_1278	0.53	-0.0
1,459,976	+		PP_1278	0.53	+0.3
1,459,976	+		PP_1278	0.53	-1.0
1,459,977	-		PP_1278	0.54	-1.7
1,459,979	+		PP_1278	0.54	+0.5
1,459,979	+		PP_1278	0.54	-0.5
1,459,980	-		PP_1278	0.54	+0.2
1,459,980	-		PP_1278	0.54	-1.5
1,460,033	+		PP_1278	0.62	-0.5
1,460,033	+		PP_1278	0.62	-0.7
1,460,034	-		PP_1278	0.62	+0.3
1,460,138	+		PP_1278	0.78	-0.2
1,460,138	+		PP_1278	0.78	-0.2
1,460,139	-		PP_1278	0.79	-0.5
1,460,146	+		PP_1278	0.80	-0.0
1,460,147	-		PP_1278	0.80	+1.1
1,460,147	-		PP_1278	0.80	-0.2
1,460,180	+		PP_1278	0.85	-0.1
1,460,181	-		PP_1278	0.85	-0.7
1,460,181	-		PP_1278	0.85	-0.3
1,460,292	+				-0.6
1,460,292	+				-0.0
1,460,414	-				-3.7
1,460,479	+		PP_1279	0.16	+0.0
1,460,521	+		PP_1279	0.19	-1.5
1,460,522	-		PP_1279	0.19	-4.6
1,460,590	+		PP_1279	0.25	+0.6
1,460,591	-		PP_1279	0.25	-4.7
1,460,591	-		PP_1279	0.25	-4.3
1,460,762	-		PP_1279	0.40	-1.8
1,460,762	-		PP_1279	0.40	-1.6
1,460,762	-		PP_1279	0.40	-1.1
1,460,762	-		PP_1279	0.40	-1.1
1,460,871	-		PP_1279	0.49	-1.8
1,460,992	+		PP_1279	0.59	+0.7
1,460,992	+		PP_1279	0.59	-0.8
1,460,993	-		PP_1279	0.60	+0.3
1,460,993	-		PP_1279	0.60	-0.8
1,461,035	-		PP_1279	0.63	-1.7
1,461,043	+		PP_1279	0.64	-0.7
1,461,086	+		PP_1279	0.68	+0.0
1,461,210	+		PP_1279	0.78	-0.6
1,461,302	-		PP_1279	0.86	+0.5
1,461,302	-		PP_1279	0.86	-0.8
1,461,430	+				+0.6
1,461,430	+				+0.0
1,461,430	+				+0.5
1,461,441	+				-1.3
1,461,441	+				+0.9
1,461,442	-				-0.4
1,461,442	-				-0.0
1,461,442	-				-1.2
1,461,442	-				+0.7
1,461,480	+				+0.1
1,461,480	+				+0.7
1,461,496	-				-4.8
1,461,496	-				-2.0
1,461,496	-				-3.7
1,461,771	+		PP_1280	0.21	+0.4
1,461,775	+		PP_1280	0.21	-1.5
1,461,775	+		PP_1280	0.21	+1.4
1,461,775	+				+2.4
1,461,775	+		PP_1280	0.21	-1.0
1,461,825	-		PP_1280	0.25	-0.8
1,461,942	+		PP_1280	0.33	-0.5
1,461,942	+		PP_1280	0.33	-0.8
1,461,942	+		PP_1280	0.33	-1.6
1,461,943	-		PP_1280	0.33	-2.0
1,461,943	-		PP_1280	0.33	-0.7
1,461,943	-		PP_1280	0.33	-0.9
1,461,943	-		PP_1280	0.33	-0.1
1,462,002	+		PP_1280	0.37	-0.1
1,462,003	-		PP_1280	0.37	-0.0
1,462,003	-		PP_1280	0.37	-0.3
1,462,006	+		PP_1280	0.37	-0.7
1,462,006	+		PP_1280	0.37	+0.0
1,462,006	+		PP_1280	0.37	+0.4
1,462,007	-		PP_1280	0.37	-0.6
1,462,007	-		PP_1280	0.37	-0.7
1,462,044	+		PP_1280	0.40	-0.1
1,462,044	+				+0.4
1,462,044	+		PP_1280	0.40	+0.6
1,462,044	+		PP_1280	0.40	-1.4
1,462,045	-		PP_1280	0.40	+0.3
1,462,045	-		PP_1280	0.40	-0.2
1,462,045	-		PP_1280	0.40	-0.8
1,462,045	-		PP_1280	0.40	+0.8
1,462,045	-		PP_1280	0.40	-1.2
1,462,050	+				-0.2
1,462,078	+		PP_1280	0.42	-0.5
1,462,079	-		PP_1280	0.42	-0.5
1,462,117	+		PP_1280	0.45	+0.3
1,462,117	+		PP_1280	0.45	-0.2
1,462,118	-		PP_1280	0.45	-0.7
1,462,119	+		PP_1280	0.45	+0.8
1,462,119	+		PP_1280	0.45	-0.1
1,462,120	-		PP_1280	0.45	-0.6
1,462,120	-		PP_1280	0.45	-0.5
1,462,120	-		PP_1280	0.45	-0.2
1,462,206	+		PP_1280	0.51	-0.4
1,462,206	+		PP_1280	0.51	+0.4
1,462,207	-		PP_1280	0.51	+0.2
1,462,221	+		PP_1280	0.52	-0.7
1,462,222	-		PP_1280	0.52	-1.8