Strain Fitness in Pseudomonas putida KT2440 around PP_0941

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
1,085,596	-		PP_0940	0.39	-1.6
1,085,675	-		PP_0940	0.45	-1.4
1,086,014	+		PP_0940	0.68	-0.6
1,086,015	-		PP_0940	0.68	-0.8
1,086,015	-		PP_0940	0.68	+0.5
1,086,119	+		PP_0940	0.76	+0.3
1,086,119	+		PP_0940	0.76	-0.5
1,086,119	+		PP_0940	0.76	+0.0
1,086,119	+		PP_0940	0.76	-0.2
1,086,119	+		PP_0940	0.76	-0.0
1,086,119	+		PP_0940	0.76	-0.9
1,086,120	-		PP_0940	0.76	+0.6
1,086,175	+		PP_0940	0.80	-0.5
1,086,175	+		PP_0940	0.80	-1.0
1,086,175	+		PP_0940	0.80	-0.1
1,086,176	-		PP_0940	0.80	-0.5
1,086,179	+		PP_0940	0.80	+0.8
1,086,179	+		PP_0940	0.80	-0.4
1,086,179	+		PP_0940	0.80	+0.1
1,086,179	+		PP_0940	0.80	-0.7
1,086,180	-		PP_0940	0.80	-0.3
1,086,180	-		PP_0940	0.80	-0.3
1,086,274	+		PP_0940	0.86	+0.6
1,086,275	-		PP_0940	0.86	+1.0
1,086,373	-				+1.0
1,086,373	-				-0.6
1,086,424	+				+0.5
1,086,425	-				+0.0
1,086,425	-				+0.4
1,086,425	-				-0.4
1,086,425	-				+0.5
1,086,425	-				+0.1
1,086,567	+				-0.9
1,086,567	+				-0.9
1,086,644	+		PP_0941	0.22	-2.3
1,086,645	-		PP_0941	0.23	-1.6
1,086,645	-		PP_0941	0.23	-1.7
1,086,645	-		PP_0941	0.23	-0.4
1,086,756	+		PP_0941	0.44	+0.4
1,086,757	-		PP_0941	0.44	-3.3
1,086,952	+		PP_0941	0.81	-0.5
1,086,953	-		PP_0941	0.82	-0.2
1,087,062	+				-1.9
1,087,177	+				-0.1
1,087,301	-		PP_0942	0.11	+0.0
1,087,301	-		PP_0942	0.11	+0.5
1,087,352	+		PP_0942	0.15	-0.6
1,087,353	-		PP_0942	0.15	+0.1
1,087,362	+		PP_0942	0.16	-0.4
1,087,362	+		PP_0942	0.16	+0.2
1,087,363	-		PP_0942	0.16	+0.1
1,087,457	+		PP_0942	0.23	+0.4
1,087,458	-		PP_0942	0.23	+0.6
1,087,458	-		PP_0942	0.23	-0.4
1,087,632	-		PP_0942	0.36	+0.0
1,087,665	+		PP_0942	0.38	+0.4
1,087,666	-		PP_0942	0.38	-1.1
1,087,695	+		PP_0942	0.40	-0.5
1,087,696	-		PP_0942	0.40	+0.5
1,087,764	+		PP_0942	0.45	-0.9
1,087,882	+		PP_0942	0.54	-0.3
1,087,986	-		PP_0942	0.62	+0.0
1,087,986	-		PP_0942	0.62	-0.3
1,088,040	-		PP_0942	0.66	-0.4
1,088,040	-		PP_0942	0.66	-0.9