Experiment: P. put PUT 10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0793 and PP_0794 are separated by 0 nucleotides PP_0794 and PP_0795 overlap by 4 nucleotides
PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345
_0793
PP_0794: PP_0794 - 1-phosphofructokinase monomer, at 912,346 to 913,293
_0794
PP_0795: PP_0795 - fructose PTS permease - IIBC component, at 913,290 to 915,032
_0795
Position (kb) 912
913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 911.487 kb on + strand, within PP_0793 at 911.686 kb on + strand, within PP_0793 at 911.687 kb on - strand, within PP_0793 at 911.687 kb on - strand, within PP_0793 at 911.817 kb on + strand, within PP_0793 at 911.817 kb on + strand, within PP_0793 at 911.922 kb on + strand, within PP_0793 at 912.013 kb on + strand, within PP_0793 at 912.014 kb on - strand, within PP_0793 at 912.081 kb on - strand at 912.387 kb on + strand at 912.510 kb on - strand, within PP_0794 at 912.621 kb on + strand, within PP_0794 at 912.622 kb on - strand, within PP_0794 at 912.622 kb on - strand, within PP_0794 at 912.833 kb on + strand, within PP_0794 at 912.833 kb on + strand, within PP_0794 at 912.834 kb on - strand, within PP_0794 at 912.904 kb on - strand, within PP_0794 at 913.304 kb on - strand at 913.304 kb on - strand at 913.339 kb on + strand at 913.340 kb on - strand at 913.340 kb on - strand at 913.409 kb on + strand at 913.410 kb on - strand at 913.410 kb on - strand at 913.628 kb on + strand, within PP_0795 at 913.679 kb on - strand, within PP_0795 at 913.685 kb on + strand, within PP_0795 at 913.685 kb on + strand, within PP_0795 at 913.686 kb on - strand, within PP_0795 at 913.840 kb on + strand, within PP_0795 at 913.868 kb on + strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.872 kb on + strand, within PP_0795 at 913.872 kb on + strand, within PP_0795 at 913.873 kb on - strand, within PP_0795 at 914.007 kb on + strand, within PP_0795 at 914.008 kb on - strand, within PP_0795 at 914.104 kb on - strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.191 kb on - strand, within PP_0795
Per-strain Table
Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1 remove 911,487 + PP_0793 0.70 -0.2 911,686 + PP_0793 0.77 +1.0 911,687 - PP_0793 0.77 -1.1 911,687 - PP_0793 0.77 +0.1 911,817 + PP_0793 0.81 -0.7 911,817 + PP_0793 0.81 +0.1 911,922 + PP_0793 0.85 +2.4 912,013 + PP_0793 0.88 +0.4 912,014 - PP_0793 0.88 +0.8 912,081 - -1.4 912,387 + -3.5 912,510 - PP_0794 0.17 -2.2 912,621 + PP_0794 0.29 -0.4 912,622 - PP_0794 0.29 -2.3 912,622 - PP_0794 0.29 -1.2 912,833 + PP_0794 0.51 -1.2 912,833 + PP_0794 0.51 -1.2 912,834 - PP_0794 0.51 -0.6 912,904 - PP_0794 0.59 -2.0 913,304 - +0.8 913,304 - -0.2 913,339 + -0.5 913,340 - -0.3 913,340 - +0.7 913,409 + +0.6 913,410 - +0.2 913,410 - +0.4 913,628 + PP_0795 0.19 +0.8 913,679 - PP_0795 0.22 -0.2 913,685 + PP_0795 0.23 +0.5 913,685 + PP_0795 0.23 +0.9 913,686 - PP_0795 0.23 +0.4 913,840 + PP_0795 0.32 -0.1 913,868 + PP_0795 0.33 +1.1 913,869 - PP_0795 0.33 -0.1 913,869 - PP_0795 0.33 -0.3 913,869 - PP_0795 0.33 -0.0 913,872 + PP_0795 0.33 -0.3 913,872 + PP_0795 0.33 +0.2 913,873 - PP_0795 0.33 +0.1 914,007 + PP_0795 0.41 +0.3 914,008 - PP_0795 0.41 +0.5 914,104 - PP_0795 0.47 +0.5 914,190 + PP_0795 0.52 +0.9 914,190 + PP_0795 0.52 +0.4 914,190 + PP_0795 0.52 -0.1 914,191 - PP_0795 0.52 +0.5
Or see this region's nucleotide sequence