Experiment: P. put PUT 10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0723 and PP_0724 are separated by 4 nucleotides PP_0724 and PP_0725 are separated by 4 nucleotides PP_0725 and PP_0726 are separated by 468 nucleotides
PP_0723: PP_0723 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 839,841 to 840,701
_0723
PP_0724: PP_0724 - Outer-membrane lipoprotein LolB, at 840,706 to 841,323
_0724
PP_0725: PP_0725 - conserved hypothetical TPR repeat protein, at 841,328 to 843,049
_0725
PP_0726: PP_0726 - Transferase, at 843,518 to 844,243
_0726
Position (kb) 841
842
843
844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 841.376 kb on - strand at 841.413 kb on - strand at 841.513 kb on - strand, within PP_0725 at 841.631 kb on - strand, within PP_0725 at 841.633 kb on - strand, within PP_0725 at 841.660 kb on - strand, within PP_0725 at 841.660 kb on - strand, within PP_0725 at 841.774 kb on - strand, within PP_0725 at 841.774 kb on - strand, within PP_0725 at 841.774 kb on - strand, within PP_0725 at 841.881 kb on - strand, within PP_0725 at 841.894 kb on - strand, within PP_0725 at 842.098 kb on - strand, within PP_0725 at 842.098 kb on - strand, within PP_0725 at 842.278 kb on - strand, within PP_0725 at 842.538 kb on - strand, within PP_0725 at 842.622 kb on - strand, within PP_0725 at 842.622 kb on - strand, within PP_0725 at 842.635 kb on - strand, within PP_0725 at 842.635 kb on - strand, within PP_0725 at 842.653 kb on - strand, within PP_0725 at 842.833 kb on - strand, within PP_0725 at 842.833 kb on - strand, within PP_0725 at 842.833 kb on - strand, within PP_0725 at 842.833 kb on - strand, within PP_0725 at 842.894 kb on - strand at 842.896 kb on - strand at 842.896 kb on - strand at 842.923 kb on - strand at 842.923 kb on - strand at 842.923 kb on - strand at 843.037 kb on - strand at 843.037 kb on - strand at 843.050 kb on - strand at 843.060 kb on - strand at 843.060 kb on - strand at 843.060 kb on - strand at 843.062 kb on - strand at 843.062 kb on - strand at 843.062 kb on - strand at 843.134 kb on + strand at 843.134 kb on + strand at 843.156 kb on - strand at 843.219 kb on + strand at 843.227 kb on - strand at 843.241 kb on - strand at 843.275 kb on + strand at 843.275 kb on + strand at 843.275 kb on + strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.288 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.314 kb on + strand at 843.355 kb on - strand at 843.355 kb on - strand at 843.459 kb on - strand at 843.480 kb on + strand at 843.492 kb on + strand at 843.531 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.545 kb on + strand at 843.636 kb on - strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.742 kb on - strand at 843.742 kb on - strand, within PP_0726 at 843.742 kb on - strand, within PP_0726 at 843.784 kb on + strand, within PP_0726 at 843.806 kb on + strand, within PP_0726 at 843.879 kb on + strand, within PP_0726 at 843.892 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.908 kb on - strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.912 kb on - strand, within PP_0726 at 843.912 kb on - strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.923 kb on + strand, within PP_0726 at 843.923 kb on + strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.952 kb on - strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.998 kb on + strand, within PP_0726 at 843.998 kb on + strand, within PP_0726 at 844.039 kb on - strand, within PP_0726
Per-strain Table
Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1 remove 841,376 - -1.3 841,413 - -1.1 841,513 - PP_0725 0.11 -3.0 841,631 - PP_0725 0.18 -2.4 841,633 - PP_0725 0.18 -2.2 841,660 - PP_0725 0.19 -2.8 841,660 - PP_0725 0.19 -2.2 841,774 - PP_0725 0.26 -1.7 841,774 - PP_0725 0.26 -3.2 841,774 - PP_0725 0.26 -2.5 841,881 - PP_0725 0.32 -1.8 841,894 - PP_0725 0.33 -2.1 842,098 - PP_0725 0.45 -1.0 842,098 - PP_0725 0.45 -1.4 842,278 - PP_0725 0.55 -0.1 842,538 - PP_0725 0.70 -1.0 842,622 - PP_0725 0.75 -3.0 842,622 - PP_0725 0.75 +0.2 842,635 - PP_0725 0.76 -3.1 842,635 - PP_0725 0.76 -1.6 842,653 - PP_0725 0.77 -2.6 842,833 - PP_0725 0.87 -2.4 842,833 - PP_0725 0.87 -3.1 842,833 - PP_0725 0.87 -0.7 842,833 - PP_0725 0.87 -2.6 842,894 - -2.4 842,896 - -2.0 842,896 - -0.7 842,923 - -0.7 842,923 - -1.8 842,923 - -1.5 843,037 - -3.0 843,037 - -1.7 843,050 - -0.1 843,060 - +1.0 843,060 - -1.0 843,060 - -0.1 843,062 - -0.3 843,062 - -0.4 843,062 - +0.5 843,134 + +2.0 843,134 + +1.0 843,156 - +0.6 843,219 + -1.3 843,227 - -0.9 843,241 - -0.1 843,275 + +0.1 843,275 + +0.7 843,275 + +0.6 843,276 - -0.2 843,276 - +1.4 843,276 - -0.8 843,276 - +0.4 843,288 + -0.7 843,312 + -0.5 843,312 + +0.0 843,312 + -0.2 843,312 + +0.3 843,312 + -0.3 843,312 + -0.1 843,312 + +0.2 843,312 + -0.1 843,313 - -0.6 843,313 - +0.4 843,313 - +0.5 843,313 - -0.3 843,313 - -0.2 843,313 - -0.0 843,314 + +0.1 843,355 - +0.0 843,355 - -0.3 843,459 - -0.8 843,480 + -0.3 843,492 + -0.3 843,531 + +1.0 843,543 + -0.4 843,543 + -0.1 843,543 + +0.4 843,543 + +0.1 843,545 + +0.5 843,636 - PP_0726 0.16 -1.9 843,741 + PP_0726 0.31 +0.5 843,741 + PP_0726 0.31 -0.3 843,741 + PP_0726 0.31 -1.0 843,742 - +1.2 843,742 - PP_0726 0.31 +0.3 843,742 - PP_0726 0.31 -1.7 843,784 + PP_0726 0.37 -0.1 843,806 + PP_0726 0.40 +0.0 843,879 + PP_0726 0.50 -0.4 843,892 + PP_0726 0.52 -0.4 843,907 + PP_0726 0.54 +0.2 843,907 + PP_0726 0.54 +0.1 843,907 + PP_0726 0.54 -0.5 843,908 - PP_0726 0.54 +0.5 843,911 + PP_0726 0.54 +2.1 843,911 + PP_0726 0.54 -0.9 843,911 + PP_0726 0.54 -0.4 843,912 - PP_0726 0.54 +0.3 843,912 - PP_0726 0.54 +1.0 843,920 + PP_0726 0.55 -0.2 843,920 + PP_0726 0.55 -0.9 843,920 + PP_0726 0.55 +0.0 843,923 + PP_0726 0.56 -0.2 843,923 + PP_0726 0.56 +0.1 843,924 - PP_0726 0.56 -0.5 843,924 - PP_0726 0.56 -0.6 843,924 - PP_0726 0.56 +0.8 843,924 - PP_0726 0.56 -0.0 843,951 + PP_0726 0.60 +0.2 843,951 + PP_0726 0.60 -0.4 843,951 + PP_0726 0.60 -0.2 843,952 - PP_0726 0.60 +0.6 843,955 + PP_0726 0.60 -0.3 843,955 + PP_0726 0.60 -0.4 843,955 + PP_0726 0.60 +0.3 843,955 + PP_0726 0.60 +0.5 843,955 + PP_0726 0.60 +0.3 843,956 - PP_0726 0.60 -0.3 843,956 - PP_0726 0.60 -0.2 843,956 - PP_0726 0.60 +0.1 843,998 + PP_0726 0.66 -0.5 843,998 + PP_0726 0.66 -0.7 844,039 - PP_0726 0.72 +0.0
Or see this region's nucleotide sequence