Strain Fitness in Pseudomonas putida KT2440 around PP_0496

Experiment: P. put PUT 10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0495 and PP_0496 are separated by 72 nucleotidesPP_0496 and PP_0497 are separated by 178 nucleotidesPP_0497 and PP_0498 are separated by 11 nucleotides PP_0495: PP_0495 - type 1 L-asparaginase, at 584,266 to 585,255 _0495 PP_0496: PP_0496 - Sodium/alanine symporter, at 585,328 to 586,770 _0496 PP_0497: PP_0497 - Transcriptional regulator, Cro/CI family, at 586,949 to 587,758 _0497 PP_0498: PP_0498 - conserved protein of unknown function, at 587,770 to 588,645 _0498 Position (kb) 585 586 587Strain fitness (log2 ratio) -1 0 1 2 3at 584.339 kb on - strandat 584.426 kb on + strand, within PP_0495at 584.426 kb on + strand, within PP_0495at 584.427 kb on - strand, within PP_0495at 584.427 kb on - strand, within PP_0495at 584.427 kb on - strand, within PP_0495at 584.427 kb on - strand, within PP_0495at 584.467 kb on - strand, within PP_0495at 584.552 kb on + strand, within PP_0495at 584.586 kb on - strand, within PP_0495at 584.587 kb on + strand, within PP_0495at 584.626 kb on + strand, within PP_0495at 584.670 kb on - strand, within PP_0495at 584.670 kb on - strand, within PP_0495at 584.756 kb on - strand, within PP_0495at 584.798 kb on + strand, within PP_0495at 584.798 kb on + strand, within PP_0495at 584.798 kb on + strand, within PP_0495at 584.799 kb on - strand, within PP_0495at 584.911 kb on + strand, within PP_0495at 584.912 kb on - strand, within PP_0495at 584.912 kb on - strand, within PP_0495at 584.912 kb on - strand, within PP_0495at 584.961 kb on - strand, within PP_0495at 585.066 kb on + strand, within PP_0495at 585.067 kb on - strand, within PP_0495at 585.067 kb on - strand, within PP_0495at 585.224 kb on + strandat 585.224 kb on + strandat 585.224 kb on + strandat 585.245 kb on - strandat 585.455 kb on - strandat 585.455 kb on - strandat 585.479 kb on + strand, within PP_0496at 585.479 kb on + strand, within PP_0496at 585.692 kb on + strand, within PP_0496at 585.692 kb on + strand, within PP_0496at 585.692 kb on + strand, within PP_0496at 585.692 kb on + strand, within PP_0496at 585.693 kb on - strand, within PP_0496at 585.695 kb on + strand, within PP_0496at 585.695 kb on + strand, within PP_0496at 585.696 kb on - strand, within PP_0496at 585.696 kb on - strand, within PP_0496at 585.696 kb on - strand, within PP_0496at 585.696 kb on - strand, within PP_0496at 585.701 kb on + strand, within PP_0496at 585.701 kb on + strand, within PP_0496at 585.702 kb on - strand, within PP_0496at 585.702 kb on - strand, within PP_0496at 585.827 kb on + strand, within PP_0496at 585.827 kb on + strand, within PP_0496at 585.828 kb on - strand, within PP_0496at 586.118 kb on + strand, within PP_0496at 586.119 kb on - strand, within PP_0496at 586.289 kb on + strand, within PP_0496at 586.289 kb on + strand, within PP_0496at 586.289 kb on + strand, within PP_0496at 586.290 kb on - strand, within PP_0496at 586.290 kb on - strand, within PP_0496at 586.319 kb on + strand, within PP_0496at 586.319 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.388 kb on + strand, within PP_0496at 586.388 kb on + strand, within PP_0496at 586.388 kb on + strand, within PP_0496at 586.388 kb on + strand, within PP_0496at 586.389 kb on - strand, within PP_0496at 586.433 kb on + strand, within PP_0496at 586.434 kb on - strand, within PP_0496at 586.434 kb on - strand, within PP_0496at 586.434 kb on - strand, within PP_0496at 586.653 kb on + strandat 586.653 kb on + strandat 586.654 kb on - strandat 586.654 kb on - strandat 586.654 kb on - strandat 586.700 kb on + strandat 586.700 kb on + strandat 586.700 kb on + strandat 586.700 kb on + strandat 586.701 kb on - strandat 586.701 kb on - strandat 586.701 kb on - strandat 586.701 kb on - strandat 586.857 kb on + strandat 586.948 kb on + strandat 586.948 kb on + strandat 586.949 kb on - strandat 586.949 kb on - strandat 587.003 kb on - strandat 587.054 kb on + strand, within PP_0497at 587.054 kb on + strand, within PP_0497at 587.055 kb on - strand, within PP_0497at 587.055 kb on - strandat 587.055 kb on - strand, within PP_0497at 587.055 kb on - strand, within PP_0497at 587.099 kb on - strand, within PP_0497at 587.261 kb on + strand, within PP_0497at 587.274 kb on - strand, within PP_0497at 587.282 kb on + strand, within PP_0497at 587.282 kb on + strand, within PP_0497at 587.416 kb on - strand, within PP_0497at 587.569 kb on - strand, within PP_0497at 587.619 kb on - strand, within PP_0497at 587.691 kb on + strandat 587.692 kb on - strandat 587.692 kb on - strandat 587.756 kb on + strandat 587.756 kb on + strandat 587.756 kb on + strandat 587.762 kb on + strandat 587.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1
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584,339 - +0.8
584,426 + PP_0495 0.16 +0.4
584,426 + PP_0495 0.16 +0.5
584,427 - PP_0495 0.16 +0.5
584,427 - PP_0495 0.16 +2.0
584,427 - PP_0495 0.16 -0.8
584,427 - PP_0495 0.16 +0.3
584,467 - PP_0495 0.20 -1.2
584,552 + PP_0495 0.29 -0.1
584,586 - PP_0495 0.32 +1.1
584,587 + PP_0495 0.32 -1.1
584,626 + PP_0495 0.36 -0.4
584,670 - PP_0495 0.41 +0.6
584,670 - PP_0495 0.41 +0.9
584,756 - PP_0495 0.49 +0.6
584,798 + PP_0495 0.54 +0.5
584,798 + PP_0495 0.54 +1.1
584,798 + PP_0495 0.54 +0.5
584,799 - PP_0495 0.54 -0.9
584,911 + PP_0495 0.65 +0.4
584,912 - PP_0495 0.65 +1.3
584,912 - PP_0495 0.65 +0.4
584,912 - PP_0495 0.65 -0.1
584,961 - PP_0495 0.70 +1.0
585,066 + PP_0495 0.81 +1.5
585,067 - PP_0495 0.81 -0.1
585,067 - PP_0495 0.81 -0.4
585,224 + -1.6
585,224 + +0.4
585,224 + +0.9
585,245 - +0.3
585,455 - +0.5
585,455 - +1.0
585,479 + PP_0496 0.10 +1.0
585,479 + PP_0496 0.10 +0.8
585,692 + PP_0496 0.25 +1.5
585,692 + PP_0496 0.25 +0.0
585,692 + PP_0496 0.25 -0.2
585,692 + PP_0496 0.25 +0.5
585,693 - PP_0496 0.25 -0.2
585,695 + PP_0496 0.25 +0.5
585,695 + PP_0496 0.25 -0.9
585,696 - PP_0496 0.26 +0.6
585,696 - PP_0496 0.26 +1.1
585,696 - PP_0496 0.26 +0.7
585,696 - PP_0496 0.26 -0.8
585,701 + PP_0496 0.26 +0.8
585,701 + PP_0496 0.26 +1.0
585,702 - PP_0496 0.26 +0.7
585,702 - PP_0496 0.26 +0.3
585,827 + PP_0496 0.35 +0.2
585,827 + PP_0496 0.35 +1.0
585,828 - PP_0496 0.35 +0.7
586,118 + PP_0496 0.55 -0.9
586,119 - PP_0496 0.55 +0.3
586,289 + PP_0496 0.67 +0.9
586,289 + PP_0496 0.67 +0.7
586,289 + PP_0496 0.67 +0.8
586,290 - PP_0496 0.67 +0.4
586,290 - PP_0496 0.67 +0.9
586,319 + PP_0496 0.69 -0.7
586,319 + PP_0496 0.69 +0.7
586,385 + PP_0496 0.73 +1.0
586,385 + PP_0496 0.73 -0.2
586,385 + PP_0496 0.73 +0.8
586,385 + PP_0496 0.73 +0.7
586,385 + PP_0496 0.73 +0.6
586,385 + PP_0496 0.73 +0.0
586,386 - PP_0496 0.73 +1.0
586,386 - PP_0496 0.73 +0.4
586,386 - PP_0496 0.73 +1.4
586,386 - PP_0496 0.73 +0.2
586,386 - PP_0496 0.73 +0.4
586,386 - PP_0496 0.73 +0.4
586,386 - PP_0496 0.73 +0.5
586,388 + PP_0496 0.73 +0.4
586,388 + PP_0496 0.73 +0.7
586,388 + PP_0496 0.73 +0.7
586,388 + PP_0496 0.73 -0.4
586,389 - PP_0496 0.74 +0.5
586,433 + PP_0496 0.77 +1.1
586,434 - PP_0496 0.77 +0.1
586,434 - PP_0496 0.77 -0.9
586,434 - PP_0496 0.77 +3.7
586,653 + +0.1
586,653 + +0.3
586,654 - +0.0
586,654 - +1.3
586,654 - +0.5
586,700 + +1.0
586,700 + +0.8
586,700 + +1.1
586,700 + +0.7
586,701 - +0.6
586,701 - -0.4
586,701 - +0.1
586,701 - +0.6
586,857 + -0.0
586,948 + +1.6
586,948 + -0.6
586,949 - +0.4
586,949 - -0.2
587,003 - +0.4
587,054 + PP_0497 0.13 +0.4
587,054 + PP_0497 0.13 +1.3
587,055 - PP_0497 0.13 +1.5
587,055 - +1.5
587,055 - PP_0497 0.13 +0.6
587,055 - PP_0497 0.13 -0.5
587,099 - PP_0497 0.19 +0.7
587,261 + PP_0497 0.39 +0.0
587,274 - PP_0497 0.40 -0.1
587,282 + PP_0497 0.41 +0.0
587,282 + PP_0497 0.41 +0.3
587,416 - PP_0497 0.58 +1.4
587,569 - PP_0497 0.77 +0.3
587,619 - PP_0497 0.83 -0.6
587,691 + +1.1
587,692 - -0.3
587,692 - +1.4
587,756 + +0.7
587,756 + +0.4
587,756 + +1.0
587,762 + +1.4
587,763 - -0.4

Or see this region's nucleotide sequence