Experiment: P. put PUT 10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0343 and PP_0344 overlap by 4 nucleotides PP_0344 and PP_0345 overlap by 1 nucleotides PP_0345 and PP_0346 overlap by 4 nucleotides
PP_0343: PP_0343 - lipopolysaccharide glucosyltransferase I, at 416,291 to 417,415
_0343
PP_0344: PP_0344 - lipopolysaccharide core heptose (I) kinase, at 417,412 to 418,218
_0344
PP_0345: PP_0345 - putative Heptose kinase WapP, at 418,218 to 418,952
_0345
PP_0346: PP_0346 - putative Heptose kinase WapQ, at 418,949 to 419,701
_0346
Position (kb) 417
418
419 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 418.362 kb on + strand, within PP_0345 at 418.362 kb on + strand, within PP_0345 at 418.362 kb on + strand, within PP_0345 at 418.365 kb on + strand, within PP_0345 at 418.365 kb on + strand, within PP_0345 at 418.365 kb on + strand, within PP_0345 at 418.377 kb on + strand, within PP_0345 at 418.732 kb on + strand, within PP_0345 at 418.872 kb on + strand, within PP_0345 at 418.872 kb on + strand, within PP_0345 at 419.111 kb on + strand, within PP_0346 at 419.111 kb on + strand, within PP_0346 at 419.111 kb on + strand, within PP_0346 at 419.111 kb on + strand, within PP_0346 at 419.114 kb on + strand at 419.114 kb on + strand, within PP_0346 at 419.114 kb on + strand, within PP_0346 at 419.114 kb on + strand, within PP_0346 at 419.114 kb on + strand, within PP_0346 at 419.135 kb on + strand, within PP_0346 at 419.146 kb on + strand, within PP_0346
Per-strain Table
Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1 remove 418,362 + PP_0345 0.20 +1.2 418,362 + PP_0345 0.20 +1.8 418,362 + PP_0345 0.20 +1.2 418,365 + PP_0345 0.20 +1.5 418,365 + PP_0345 0.20 -0.7 418,365 + PP_0345 0.20 +1.7 418,377 + PP_0345 0.22 +1.4 418,732 + PP_0345 0.70 +1.5 418,872 + PP_0345 0.89 +2.1 418,872 + PP_0345 0.89 +0.4 419,111 + PP_0346 0.22 -0.3 419,111 + PP_0346 0.22 +0.5 419,111 + PP_0346 0.22 -4.0 419,111 + PP_0346 0.22 -4.8 419,114 + +1.5 419,114 + PP_0346 0.22 +0.2 419,114 + PP_0346 0.22 -0.9 419,114 + PP_0346 0.22 +1.0 419,114 + PP_0346 0.22 -0.5 419,135 + PP_0346 0.25 +0.2 419,146 + PP_0346 0.26 +0.0
Or see this region's nucleotide sequence