Strain Fitness in Pseudomonas putida KT2440 around PP_0343

Experiment: P. put PUT 10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0342 and PP_0343 overlap by 1 nucleotidesPP_0343 and PP_0344 overlap by 4 nucleotidesPP_0344 and PP_0345 overlap by 1 nucleotides PP_0342: PP_0342 - ADP-heptose:LPS heptosyltransferase I, at 415,233 to 416,291 _0342 PP_0343: PP_0343 - lipopolysaccharide glucosyltransferase I, at 416,291 to 417,415 _0343 PP_0344: PP_0344 - lipopolysaccharide core heptose (I) kinase, at 417,412 to 418,218 _0344 PP_0345: PP_0345 - putative Heptose kinase WapP, at 418,218 to 418,952 _0345 Position (kb) 416 417 418Strain fitness (log2 ratio) -1 0 1 2at 418.362 kb on + strand, within PP_0345at 418.362 kb on + strand, within PP_0345at 418.362 kb on + strand, within PP_0345at 418.365 kb on + strand, within PP_0345at 418.365 kb on + strand, within PP_0345at 418.365 kb on + strand, within PP_0345at 418.377 kb on + strand, within PP_0345

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1
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418,362 + PP_0345 0.20 +1.2
418,362 + PP_0345 0.20 +1.8
418,362 + PP_0345 0.20 +1.2
418,365 + PP_0345 0.20 +1.5
418,365 + PP_0345 0.20 -0.7
418,365 + PP_0345 0.20 +1.7
418,377 + PP_0345 0.22 +1.4

Or see this region's nucleotide sequence