Strain Fitness in Pseudomonas putida KT2440 around PP_0074

Experiment: P. put PUT 10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0073 and PP_0074 are separated by 25 nucleotidesPP_0074 and PP_0075 are separated by 129 nucleotides PP_0073: PP_0073 - Coproporphyrinogen-III oxidase, aerobic, at 83,261 to 84,172 _0073 PP_0074: PP_0074 - shikimate 5-dehydrogenase, at 84,198 to 85,022 _0074 PP_0075: PP_0075 - putative choline sulfate transporter, at 85,152 to 86,717 _0075 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1at 83.217 kb on + strandat 83.217 kb on + strandat 83.218 kb on - strandat 83.218 kb on - strandat 84.170 kb on + strandat 84.171 kb on - strandat 84.187 kb on + strandat 84.207 kb on + strandat 85.077 kb on + strandat 85.078 kb on - strandat 85.078 kb on - strandat 85.078 kb on - strandat 85.078 kb on - strandat 85.084 kb on + strandat 85.085 kb on - strandat 85.330 kb on - strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.336 kb on - strand, within PP_0075at 85.336 kb on - strand, within PP_0075at 85.376 kb on - strand, within PP_0075at 85.407 kb on + strand, within PP_0075at 85.407 kb on + strand, within PP_0075at 85.408 kb on - strand, within PP_0075at 85.408 kb on - strand, within PP_0075at 85.408 kb on - strand, within PP_0075at 85.416 kb on + strand, within PP_0075at 85.416 kb on + strand, within PP_0075at 85.416 kb on + strand, within PP_0075at 85.416 kb on + strand, within PP_0075at 85.417 kb on - strand, within PP_0075at 85.417 kb on - strand, within PP_0075at 85.417 kb on - strand, within PP_0075at 85.417 kb on - strand, within PP_0075at 85.417 kb on - strand, within PP_0075at 85.504 kb on + strand, within PP_0075at 85.505 kb on - strand, within PP_0075at 85.756 kb on + strand, within PP_0075at 85.756 kb on + strand, within PP_0075at 85.795 kb on + strand, within PP_0075at 85.796 kb on - strand, within PP_0075at 85.820 kb on + strand, within PP_0075

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1
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83,217 + +0.1
83,217 + +0.5
83,218 - +0.6
83,218 - -0.5
84,170 + +0.5
84,171 - -0.3
84,187 + +0.3
84,207 + -0.2
85,077 + -0.0
85,078 - +0.7
85,078 - -0.2
85,078 - -0.8
85,078 - -1.4
85,084 + -0.3
85,085 - -0.5
85,330 - PP_0075 0.11 +1.0
85,335 + PP_0075 0.12 -0.4
85,335 + PP_0075 0.12 -1.1
85,335 + PP_0075 0.12 +0.3
85,335 + PP_0075 0.12 +0.3
85,335 + PP_0075 0.12 -1.0
85,335 + PP_0075 0.12 +0.1
85,335 + PP_0075 0.12 -2.3
85,336 - PP_0075 0.12 -0.1
85,336 - PP_0075 0.12 -0.0
85,376 - PP_0075 0.14 -0.2
85,407 + PP_0075 0.16 -0.9
85,407 + PP_0075 0.16 -1.3
85,408 - PP_0075 0.16 +0.6
85,408 - PP_0075 0.16 -0.4
85,408 - PP_0075 0.16 +0.3
85,416 + PP_0075 0.17 -0.9
85,416 + PP_0075 0.17 -0.3
85,416 + PP_0075 0.17 +0.6
85,416 + PP_0075 0.17 +0.5
85,417 - PP_0075 0.17 -1.4
85,417 - PP_0075 0.17 -0.6
85,417 - PP_0075 0.17 -0.3
85,417 - PP_0075 0.17 +0.1
85,417 - PP_0075 0.17 -0.9
85,504 + PP_0075 0.22 -0.9
85,505 - PP_0075 0.23 +0.2
85,756 + PP_0075 0.39 +0.5
85,756 + PP_0075 0.39 +1.0
85,795 + PP_0075 0.41 -0.6
85,796 - PP_0075 0.41 -0.3
85,820 + PP_0075 0.43 +0.9

Or see this region's nucleotide sequence