Strain Fitness in Pseudomonas putida KT2440 around PP_t72

Experiment: P. put PUT 10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5439 and PP_5440 are separated by 239 nucleotidesPP_5440 and PP_t72 are separated by 188 nucleotidesPP_t72 and PP_0285 are separated by 90 nucleotidesPP_0285 and PP_0286 overlap by 4 nucleotides PP_5439: PP_5439 - conserved protein of unknown function, at 343,001 to 343,444 _5439 PP_5440: PP_5440 - conserved protein of unknown function, at 343,684 to 343,911 _5440 PP_t72: PP_t72 - tRNA-Phe, at 344,100 to 344,175 _t72 PP_0285: PP_0285 - Fe(2+)-trafficking protein, at 344,266 to 344,538 _0285 PP_0286: PP_0286 - adenine glycosylase, at 344,535 to 345,602 _0286 Position (kb) 344 345Strain fitness (log2 ratio) -2 -1 0 1 2at 343.158 kb on + strand, within PP_5439at 343.158 kb on + strand, within PP_5439at 343.159 kb on - strand, within PP_5439at 343.314 kb on + strand, within PP_5439at 343.314 kb on + strand, within PP_5439at 343.315 kb on - strand, within PP_5439at 343.373 kb on + strand, within PP_5439at 343.479 kb on - strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.549 kb on - strandat 343.549 kb on - strandat 343.549 kb on - strandat 343.553 kb on - strandat 343.553 kb on - strandat 343.561 kb on + strandat 343.583 kb on + strandat 343.584 kb on - strandat 343.584 kb on - strandat 343.584 kb on - strandat 343.584 kb on - strandat 343.669 kb on + strandat 343.669 kb on + strandat 343.697 kb on - strandat 343.717 kb on + strand, within PP_5440at 343.717 kb on + strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.741 kb on + strand, within PP_5440at 343.742 kb on - strand, within PP_5440at 343.779 kb on + strand, within PP_5440at 343.779 kb on + strand, within PP_5440at 343.780 kb on - strand, within PP_5440at 343.852 kb on + strand, within PP_5440at 343.852 kb on + strand, within PP_5440at 343.853 kb on - strand, within PP_5440at 343.853 kb on - strand, within PP_5440at 343.853 kb on - strand, within PP_5440at 343.909 kb on + strandat 343.909 kb on + strandat 343.910 kb on - strandat 343.961 kb on + strandat 343.962 kb on - strandat 344.286 kb on - strandat 344.511 kb on - strandat 344.633 kb on - strandat 344.633 kb on - strandat 344.633 kb on - strandat 344.633 kb on - strandat 344.861 kb on - strand, within PP_0286at 345.026 kb on + strand, within PP_0286at 345.064 kb on + strand, within PP_0286at 345.065 kb on - strand, within PP_0286at 345.089 kb on + strand, within PP_0286at 345.111 kb on + strand, within PP_0286at 345.111 kb on + strand, within PP_0286at 345.112 kb on - strand, within PP_0286at 345.112 kb on - strand, within PP_0286at 345.112 kb on - strandat 345.160 kb on + strand, within PP_0286at 345.160 kb on + strand, within PP_0286at 345.161 kb on - strand, within PP_0286

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1
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343,158 + PP_5439 0.35 -1.5
343,158 + PP_5439 0.35 -2.5
343,159 - PP_5439 0.36 -1.5
343,314 + PP_5439 0.70 -1.9
343,314 + PP_5439 0.70 -2.5
343,315 - PP_5439 0.71 -1.1
343,373 + PP_5439 0.84 -1.4
343,479 - -0.3
343,548 + -0.7
343,548 + +1.6
343,548 + +1.1
343,548 + +0.3
343,548 + +0.2
343,548 + +0.4
343,549 - -0.7
343,549 - +0.1
343,549 - -0.1
343,553 - -1.0
343,553 - -0.6
343,561 + -0.5
343,583 + +0.9
343,584 - +0.1
343,584 - +0.1
343,584 - -0.6
343,584 - -0.2
343,669 + +1.5
343,669 + -0.2
343,697 - +2.1
343,717 + PP_5440 0.14 +0.7
343,717 + PP_5440 0.14 +0.2
343,739 - PP_5440 0.24 -0.4
343,739 - PP_5440 0.24 -0.0
343,739 - PP_5440 0.24 -0.7
343,739 - PP_5440 0.24 -0.7
343,741 + PP_5440 0.25 -0.9
343,742 - PP_5440 0.25 +0.3
343,779 + PP_5440 0.42 -1.2
343,779 + PP_5440 0.42 +0.7
343,780 - PP_5440 0.42 -0.7
343,852 + PP_5440 0.74 -0.5
343,852 + PP_5440 0.74 -0.4
343,853 - PP_5440 0.74 -0.8
343,853 - PP_5440 0.74 -1.3
343,853 - PP_5440 0.74 -2.7
343,909 + +0.1
343,909 + -0.1
343,910 - -1.4
343,961 + -0.3
343,962 - -0.1
344,286 - +0.4
344,511 - +1.0
344,633 - -0.3
344,633 - -0.1
344,633 - +0.1
344,633 - -0.3
344,861 - PP_0286 0.31 -0.4
345,026 + PP_0286 0.46 -1.3
345,064 + PP_0286 0.50 -1.7
345,065 - PP_0286 0.50 -2.3
345,089 + PP_0286 0.52 -0.5
345,111 + PP_0286 0.54 +0.2
345,111 + PP_0286 0.54 -0.5
345,112 - PP_0286 0.54 +0.2
345,112 - PP_0286 0.54 -0.0
345,112 - +2.7
345,160 + PP_0286 0.59 -0.6
345,160 + PP_0286 0.59 +0.8
345,161 - PP_0286 0.59 -0.0

Or see this region's nucleotide sequence