Strain Fitness in Pseudomonas putida KT2440 around PP_5421

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
15,760	+				+1.4
15,760	+				+1.3
15,760	+				+1.7
15,760	+				+1.0
15,760	+				+1.8
15,761	-				+1.9
15,761	-				+1.7
15,761	-				+2.1
15,793	+				+0.5
15,793	+				+1.6
15,794	-				+1.2
16,155	-				+0.0
16,270	-				-0.6
16,389	+				+0.6
16,389	+				-0.2
16,472	+				-0.5
16,597	-				+1.7
16,781	+		PP_5421	0.30	-0.6
16,781	+		PP_5421	0.30	-1.2
16,791	-		PP_5421	0.32	+0.1
16,791	-		PP_5421	0.32	-0.4
16,791	-		PP_5421	0.32	-0.2
16,804	-		PP_5421	0.34	-1.2
16,804	-		PP_5421	0.34	-0.6
16,907	+		PP_5421	0.50	-0.4
16,984	+		PP_5421	0.62	-0.0
16,984	+		PP_5421	0.62	-1.0
16,984	+		PP_5421	0.62	-0.7
16,984	+		PP_5421	0.62	-1.4
16,984	+		PP_5421	0.62	-0.8
16,984	+		PP_5421	0.62	-0.5
16,985	-		PP_5421	0.62	-0.1
16,985	-		PP_5421	0.62	-0.4
16,997	+		PP_5421	0.64	-0.0
16,997	+		PP_5421	0.64	-1.5
16,997	+		PP_5421	0.64	+0.1
17,043	+		PP_5421	0.71	+0.3
17,044	-		PP_5421	0.71	-0.3
17,044	-		PP_5421	0.71	+0.6
17,044	-		PP_5421	0.71	+0.0
17,044	-		PP_5421	0.71	-0.4
17,044	-		PP_5421	0.71	-0.2
17,071	+		PP_5421	0.75	-0.8
17,093	+		PP_5421	0.79	-1.1
17,093	+		PP_5421	0.79	-1.1
17,093	+		PP_5421	0.79	-0.8
17,094	-		PP_5421	0.79	+0.9
17,094	-		PP_5421	0.79	-0.5
17,127	+		PP_5421	0.84	-0.1
17,158	+		PP_5421	0.89	-1.3
17,158	+		PP_5421	0.89	+0.2
17,158	+		PP_5421	0.89	-1.6
17,159	-		PP_5421	0.89	-0.8
17,159	-		PP_5421	0.89	+0.9
17,159	-		PP_5421	0.89	-0.0
17,159	-		PP_5421	0.89	-1.7
17,257	+				-1.8
17,257	+				-2.8
17,283	-				-1.0
17,283	-				-0.1
17,283	-				-0.4
17,349	+				-1.6
17,349	+				+0.6
17,349	+				-0.5
17,349	+				-2.1
17,349	+				-2.0
17,358	+				-1.3
17,358	+				-1.2
17,358	+				-2.3
17,359	-				-1.0
17,397	+				-2.1
17,415	+		PP_0014	0.11	-0.8
17,415	+		PP_0014	0.11	-1.4
17,415	+		PP_0014	0.11	-1.5
17,416	-		PP_0014	0.11	-0.3
17,416	-		PP_0014	0.11	+0.5
17,504	-		PP_0014	0.15	-1.3
17,504	-		PP_0014	0.15	-0.8
17,508	-		PP_0014	0.15	-0.2
17,521	-		PP_0014	0.16	-0.1
17,528	-		PP_0014	0.16	-0.3
17,558	+		PP_0014	0.18	-0.3
17,559	-		PP_0014	0.18	+0.1
17,565	-		PP_0014	0.18	+0.5
17,647	+		PP_0014	0.22	-0.1
17,647	+		PP_0014	0.22	+0.0
17,647	+		PP_0014	0.22	-0.4
17,647	+		PP_0014	0.22	-0.7
17,650	+		PP_0014	0.23	-0.6
17,650	+		PP_0014	0.23	-0.4
17,650	+		PP_0014	0.23	-0.5
17,651	-		PP_0014	0.23	-0.3
17,658	-		PP_0014	0.23	+0.6
17,658	-		PP_0014	0.23	-0.1
17,733	-		PP_0014	0.27	+0.1
17,735	+		PP_0014	0.27	-0.1
17,736	-		PP_0014	0.27	-0.6
17,743	-		PP_0014	0.27	+0.6
17,872	-		PP_0014	0.34	-0.3
17,893	-		PP_0014	0.35	+0.2
17,962	+		PP_0014	0.38	-2.0
17,962	+		PP_0014	0.38	-0.8
17,962	+		PP_0014	0.38	-0.6
17,962	+		PP_0014	0.38	+0.4
17,962	+		PP_0014	0.38	-0.9
17,962	+		PP_0014	0.38	+0.4
17,963	-		PP_0014	0.39	+0.5
18,105	+		PP_0014	0.46	-0.4
18,106	-		PP_0014	0.46	-1.8
18,106	-		PP_0014	0.46	-0.9
18,106	-		PP_0014	0.46	-0.7
18,132	-		PP_0014	0.47	-0.0
18,133	-		PP_0014	0.47	+0.0