Experiment: P. put PUT 10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5058 and PP_5059 are separated by 8 nucleotides PP_5059 and PP_5060 are separated by 43 nucleotides
PP_5058: PP_5058 - Carboxy-terminal-processing protease, at 5,764,020 to 5,765,336
_5058
PP_5059: PP_5059 - conserved exported protein of unknown function, at 5,765,345 to 5,766,112
_5059
PP_5060: PP_5060 - conserved protein of unknown function, at 5,766,156 to 5,770,871
_5060
Position (kb) 5765
5766
5767 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5764.363 kb on + strand, within PP_5058 at 5764.363 kb on + strand, within PP_5058 at 5764.363 kb on + strand, within PP_5058 at 5764.391 kb on - strand, within PP_5058 at 5764.625 kb on - strand, within PP_5058 at 5764.638 kb on + strand, within PP_5058 at 5764.644 kb on + strand, within PP_5058 at 5764.645 kb on - strand, within PP_5058 at 5764.912 kb on + strand, within PP_5058 at 5765.076 kb on + strand, within PP_5058 at 5765.079 kb on + strand, within PP_5058 at 5765.079 kb on + strand, within PP_5058 at 5765.079 kb on + strand, within PP_5058 at 5765.079 kb on + strand, within PP_5058 at 5765.080 kb on - strand, within PP_5058 at 5765.080 kb on - strand, within PP_5058 at 5765.080 kb on - strand, within PP_5058 at 5765.344 kb on + strand at 5765.344 kb on + strand at 5765.344 kb on + strand at 5765.345 kb on - strand at 5765.345 kb on - strand at 5765.345 kb on - strand at 5765.351 kb on + strand at 5765.352 kb on - strand at 5765.352 kb on - strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.418 kb on - strand at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.847 kb on + strand, within PP_5059 at 5765.847 kb on + strand, within PP_5059 at 5765.848 kb on - strand, within PP_5059 at 5765.859 kb on + strand, within PP_5059 at 5765.860 kb on - strand, within PP_5059 at 5765.860 kb on - strand, within PP_5059 at 5765.915 kb on - strand, within PP_5059 at 5765.915 kb on - strand, within PP_5059 at 5766.085 kb on + strand at 5766.085 kb on + strand at 5766.193 kb on + strand at 5766.212 kb on - strand at 5766.222 kb on + strand at 5766.222 kb on + strand at 5766.223 kb on - strand at 5766.223 kb on - strand at 5766.403 kb on + strand at 5766.416 kb on - strand at 5766.416 kb on - strand at 5766.448 kb on + strand at 5766.449 kb on - strand at 5766.449 kb on - strand at 5766.520 kb on + strand at 5766.678 kb on - strand, within PP_5060 at 5766.678 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.939 kb on + strand, within PP_5060 at 5766.940 kb on - strand, within PP_5060 at 5766.940 kb on - strand, within PP_5060 at 5766.986 kb on - strand, within PP_5060 at 5766.986 kb on - strand, within PP_5060 at 5767.060 kb on - strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060
Per-strain Table
Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1 remove 5,764,363 + PP_5058 0.26 -1.2 5,764,363 + PP_5058 0.26 -1.3 5,764,363 + PP_5058 0.26 +0.2 5,764,391 - PP_5058 0.28 -1.0 5,764,625 - PP_5058 0.46 -2.0 5,764,638 + PP_5058 0.47 -2.5 5,764,644 + PP_5058 0.47 -2.4 5,764,645 - PP_5058 0.47 -1.4 5,764,912 + PP_5058 0.68 -2.0 5,765,076 + PP_5058 0.80 -0.8 5,765,079 + PP_5058 0.80 -1.7 5,765,079 + PP_5058 0.80 -2.7 5,765,079 + PP_5058 0.80 -0.6 5,765,079 + PP_5058 0.80 -2.9 5,765,080 - PP_5058 0.80 -1.3 5,765,080 - PP_5058 0.80 -0.1 5,765,080 - PP_5058 0.80 -3.1 5,765,344 + -0.3 5,765,344 + -0.0 5,765,344 + +0.4 5,765,345 - +0.6 5,765,345 - -1.3 5,765,345 - -0.5 5,765,351 + -0.5 5,765,352 - +0.1 5,765,352 - +0.5 5,765,417 + -0.5 5,765,417 + +0.3 5,765,417 + +0.9 5,765,417 + -0.2 5,765,418 - +0.9 5,765,606 + PP_5059 0.34 -0.6 5,765,606 + PP_5059 0.34 -1.5 5,765,606 + PP_5059 0.34 -0.1 5,765,606 + PP_5059 0.34 -0.4 5,765,847 + PP_5059 0.65 +0.1 5,765,847 + PP_5059 0.65 -0.3 5,765,848 - PP_5059 0.65 -0.0 5,765,859 + PP_5059 0.67 -1.2 5,765,860 - PP_5059 0.67 -0.3 5,765,860 - PP_5059 0.67 +0.7 5,765,915 - PP_5059 0.74 +0.3 5,765,915 - PP_5059 0.74 -0.0 5,766,085 + -0.4 5,766,085 + -0.6 5,766,193 + -0.5 5,766,212 - -1.3 5,766,222 + -0.3 5,766,222 + +0.7 5,766,223 - +0.2 5,766,223 - +1.1 5,766,403 + -0.2 5,766,416 - +0.2 5,766,416 - -0.8 5,766,448 + +0.6 5,766,449 - +0.5 5,766,449 - -0.3 5,766,520 + -0.2 5,766,678 - PP_5060 0.11 -1.3 5,766,678 - PP_5060 0.11 +0.1 5,766,823 - PP_5060 0.14 -0.0 5,766,823 - PP_5060 0.14 -1.2 5,766,823 - PP_5060 0.14 +0.3 5,766,939 + PP_5060 0.17 -0.7 5,766,940 - PP_5060 0.17 -0.1 5,766,940 - PP_5060 0.17 -0.1 5,766,986 - PP_5060 0.18 -0.3 5,766,986 - PP_5060 0.18 -0.4 5,767,060 - PP_5060 0.19 +0.5 5,767,090 + PP_5060 0.20 +0.2 5,767,090 + PP_5060 0.20 +0.4 5,767,090 + PP_5060 0.20 -0.4 5,767,091 - PP_5060 0.20 +0.1 5,767,091 - PP_5060 0.20 -0.6 5,767,091 - PP_5060 0.20 +0.6
Or see this region's nucleotide sequence