Experiment: P. put PUT 10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4874 and PP_4875 are separated by 20 nucleotides PP_4875 and PP_4876 are separated by 33 nucleotides PP_4876 and PP_4877 are separated by 28 nucleotides
PP_4874: PP_4874 - 50S ribosomal protein L9, at 5,542,812 to 5,543,258
_4874
PP_4875: PP_4875 - conserved membrane protein of unknown function, at 5,543,279 to 5,544,142
_4875
PP_4876: PP_4876 - 30S ribosomal protein S18, at 5,544,176 to 5,544,406
_4876
PP_4877: PP_4877 - 30S ribosomal protein S6, at 5,544,435 to 5,544,860
_4877
Position (kb) 5544
5545 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5543.195 kb on + strand, within PP_4874 at 5543.409 kb on + strand, within PP_4875 at 5543.409 kb on + strand, within PP_4875 at 5543.409 kb on + strand, within PP_4875 at 5543.410 kb on - strand, within PP_4875 at 5543.410 kb on - strand, within PP_4875 at 5543.410 kb on - strand, within PP_4875 at 5543.410 kb on - strand, within PP_4875 at 5543.410 kb on - strand, within PP_4875 at 5543.410 kb on - strand, within PP_4875 at 5543.410 kb on - strand, within PP_4875 at 5543.410 kb on - strand, within PP_4875 at 5543.628 kb on + strand, within PP_4875 at 5543.647 kb on - strand, within PP_4875 at 5545.044 kb on - strand at 5545.047 kb on + strand at 5545.047 kb on + strand at 5545.047 kb on + strand at 5545.048 kb on - strand at 5545.048 kb on - strand at 5545.048 kb on - strand at 5545.048 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1 remove 5,543,195 + PP_4874 0.86 -3.3 5,543,409 + PP_4875 0.15 -1.4 5,543,409 + PP_4875 0.15 -3.0 5,543,409 + PP_4875 0.15 -0.6 5,543,410 - PP_4875 0.15 -3.5 5,543,410 - PP_4875 0.15 +0.6 5,543,410 - PP_4875 0.15 -2.5 5,543,410 - PP_4875 0.15 -3.3 5,543,410 - PP_4875 0.15 +0.4 5,543,410 - PP_4875 0.15 -3.6 5,543,410 - PP_4875 0.15 -2.9 5,543,410 - PP_4875 0.15 +2.0 5,543,628 + PP_4875 0.40 -2.4 5,543,647 - PP_4875 0.43 +1.9 5,545,044 - -0.8 5,545,047 + +2.1 5,545,047 + +0.1 5,545,047 + +2.1 5,545,048 - +0.8 5,545,048 - -0.2 5,545,048 - +0.7 5,545,048 - -0.7
Or see this region's nucleotide sequence