Strain Fitness in Pseudomonas putida KT2440 around PP_4648

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
5,271,902	+				-0.4
5,271,903	-				-0.2
5,271,903	-				-0.0
5,271,953	+				+0.1
5,271,953	+				-0.2
5,271,955	+				-0.6
5,271,955	+				+0.3
5,271,955	+				+0.3
5,271,980	+				-0.7
5,271,980	+				+1.2
5,271,981	-				-0.8
5,272,006	+				-1.1
5,272,111	+				+0.5
5,272,188	-		PP_4647	0.19	-1.3
5,272,206	+		PP_4647	0.22	-1.3
5,272,206	+		PP_4647	0.22	+0.7
5,272,207	-		PP_4647	0.22	+0.8
5,272,207	-		PP_4647	0.22	+0.3
5,272,221	+		PP_4647	0.24	-1.1
5,272,222	-		PP_4647	0.24	+0.1
5,272,263	+		PP_4647	0.30	+1.0
5,272,333	-		PP_4647	0.40	-0.1
5,272,372	-		PP_4647	0.45	+0.7
5,272,372	-		PP_4647	0.45	-0.7
5,272,476	+		PP_4647	0.60	-0.0
5,272,477	-		PP_4647	0.60	+0.3
5,272,477	-		PP_4647	0.60	-0.3
5,272,526	-		PP_4647	0.67	-0.6
5,272,552	+		PP_4647	0.71	-1.5
5,272,790	+				-0.2
5,272,791	-				+1.1
5,272,950	+				+0.2
5,272,950	+				+1.0
5,272,967	-		PP_4648	0.10	+1.3
5,272,967	-		PP_4648	0.10	-0.3
5,273,331	+		PP_4648	0.42	+0.2
5,273,331	+		PP_4648	0.42	+1.0
5,273,332	-		PP_4648	0.42	-0.4
5,273,344	+		PP_4648	0.44	+1.3
5,273,433	+		PP_4648	0.51	+0.5
5,273,530	+		PP_4648	0.60	-0.2
5,273,531	-		PP_4648	0.60	+1.3
5,273,625	+		PP_4648	0.69	-1.7
5,273,626	-		PP_4648	0.69	-0.7
5,273,626	-		PP_4648	0.69	+1.3
5,273,646	+		PP_4648	0.70	+0.8
5,273,646	+		PP_4648	0.70	+0.1
5,273,646	+		PP_4648	0.70	-1.1
5,273,647	-		PP_4648	0.70	+0.4
5,273,795	-		PP_4648	0.84	+0.4
5,273,795	-		PP_4648	0.84	+0.2
5,273,797	+				+0.0
5,273,797	+		PP_4648	0.84	+0.7
5,273,851	+		PP_4648	0.89	+0.2
5,273,852	-		PP_4648	0.89	+1.0
5,273,852	-		PP_4648	0.89	+0.2
5,273,865	+		PP_4648	0.90	-0.4
5,273,865	+		PP_4648	0.90	+0.7
5,273,865	+		PP_4648	0.90	+0.6
5,273,865	+		PP_4648	0.90	+0.8
5,273,866	-				-0.1
5,273,872	+				+0.6
5,273,873	-				-0.2
5,273,873	-				+0.4
5,273,873	-				+0.9
5,273,976	+				+1.0
5,273,976	+				-0.9
5,274,041	-				-0.1
5,274,041	-				-0.2
5,274,041	-				-1.0
5,274,082	+				-0.2
5,274,082	+				+0.1
5,274,082	+				-1.6
5,274,083	-				-1.0
5,274,250	+				+0.5
5,274,250	+				+0.6
5,274,251	-				+0.9
5,274,292	+				-1.0
5,274,292	+				+0.2
5,274,292	+				+1.2
5,274,292	+				+0.4
5,274,293	-				+0.2
5,274,293	-				-0.3
5,274,293	-				-0.4
5,274,293	-				-0.2
5,274,293	-				+0.7
5,274,295	+				+0.1
5,274,295	+				-1.4
5,274,295	+				+1.0
5,274,296	-				-1.1
5,274,309	-				+0.1
5,274,309	-				-0.3
5,274,310	+				+0.5
5,274,310	+				-1.1
5,274,310	+				-2.4
5,274,310	+				-1.8
5,274,310	+				+0.0
5,274,311	-				+0.6
5,274,311	-				+0.2
5,274,311	-				-0.6
5,274,311	-				+0.5
5,274,320	+				-1.5
5,274,342	-				-0.0
5,274,416	+		PP_4650	0.17	-0.0
5,274,417	-		PP_4650	0.17	-0.1
5,274,417	-		PP_4650	0.17	+0.1
5,274,445	+		PP_4650	0.19	-0.3
5,274,446	-		PP_4650	0.20	-0.2
5,274,462	+		PP_4650	0.21	+0.3
5,274,463	-		PP_4650	0.21	-0.1
5,274,487	+		PP_4650	0.24	+1.2
5,274,523	+		PP_4650	0.27	-0.1
5,274,524	-		PP_4650	0.27	+0.5
5,274,746	-		PP_4650	0.49	-0.3
5,274,746	-		PP_4650	0.49	-0.1
5,274,899	+		PP_4650	0.64	-0.3
5,274,900	-		PP_4650	0.65	+0.5