Strain Fitness in Pseudomonas putida KT2440 around PP_4490

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
5,101,046	+		PP_4489	0.63	-0.9
5,101,046	+		PP_4489	0.63	-2.0
5,101,046	+		PP_4489	0.63	-0.5
5,101,046	+		PP_4489	0.63	-1.9
5,101,046	+		PP_4489	0.63	-0.8
5,101,046	+		PP_4489	0.63	-0.3
5,101,046	+		PP_4489	0.63	-1.9
5,101,047	-		PP_4489	0.63	-0.2
5,101,047	-		PP_4489	0.63	-1.7
5,101,047	-		PP_4489	0.63	-0.7
5,101,047	-		PP_4489	0.63	-2.8
5,101,050	+		PP_4489	0.63	-0.2
5,101,050	+		PP_4489	0.63	-1.8
5,101,051	-		PP_4489	0.63	-0.1
5,101,234	+		PP_4489	0.75	-0.4
5,101,235	-		PP_4489	0.75	-1.4
5,101,235	-		PP_4489	0.75	+0.2
5,101,238	+		PP_4489	0.75	-0.5
5,101,238	+		PP_4489	0.75	-0.2
5,101,419	+		PP_4489	0.87	+0.4
5,101,502	+				-0.7
5,101,502	+				-0.2
5,101,503	-				-1.2
5,101,543	+				-0.5
5,101,544	-				-0.6
5,101,544	-				-0.1
5,101,620	+				-0.1
5,101,681	+				-1.6
5,101,681	+				+0.3
5,101,828	+				+0.5
5,101,829	-				-0.2
5,101,853	+				-0.3
5,101,854	-				-1.0
5,101,854	-				-0.7
5,101,854	-				-0.2
5,101,854	-				-0.8
5,101,854	-				-1.4
5,101,899	+				-2.5
5,101,899	+				+0.1
5,101,900	-				-0.8
5,101,900	-				-1.3
5,101,900	-				-1.6
5,101,900	-				-0.4
5,101,931	+				-0.1
5,101,932	-				-3.6
5,102,019	+		PP_4490	0.17	-0.9
5,102,221	-		PP_4490	0.43	-0.6
5,102,308	-		PP_4490	0.54	-0.2
5,102,350	-		PP_4490	0.59	-3.1
5,102,364	+		PP_4490	0.61	-0.4
5,102,419	-		PP_4490	0.68	-1.0
5,102,419	-		PP_4490	0.68	-0.4
5,102,457	+		PP_4490	0.73	-1.7
5,102,457	+		PP_4490	0.73	+0.3
5,102,458	-		PP_4490	0.73	-1.7
5,102,458	-		PP_4490	0.73	+1.6
5,102,513	+		PP_4490	0.80	-1.7
5,102,513	+		PP_4490	0.80	-0.5
5,102,514	-		PP_4490	0.80	-0.6
5,102,514	-		PP_4490	0.80	-1.7
5,102,514	-		PP_4490	0.80	-0.5
5,102,514	-		PP_4490	0.80	-0.6
5,102,548	-		PP_4490	0.84	-0.2
5,102,555	-		PP_4490	0.85	-0.6
5,102,615	+				-0.1
5,102,615	+				-0.1
5,102,615	+				+0.1
5,102,825	-		PP_4491	0.32	+0.2
5,103,066	+				-0.6
5,103,066	+				-0.4
5,103,067	-				+0.3
5,103,112	+				+1.8
5,103,112	+				+0.3
5,103,112	+				+0.5
5,103,112	+				+3.0
5,103,113	-				-0.3
5,103,113	-				+0.8
5,103,113	-				-0.1
5,103,113	-				+0.1
5,103,113	-				-1.1
5,103,384	+				+0.4
5,103,384	+				-0.3
5,103,384	+				-1.2
5,103,384	+				+0.2
5,103,385	-				-1.0
5,103,385	-				+0.2
5,103,458	-				-0.4
5,103,471	+				+1.1
5,103,472	-				+0.8
5,103,472	-				+0.5
5,103,472	-				-0.8
5,103,472	-				-0.4
5,103,472	-				-0.8
5,103,634	+				+0.9
5,103,634	+				-0.3
5,103,635	-				+0.2
5,103,635	-				+1.4
5,103,635	-				-0.6
5,103,635	-				-0.1