Strain Fitness in Pseudomonas putida KT2440 around PP_3620

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
4,113,452	-		PP_3619	0.11	+0.1
4,113,473	+		PP_3619	0.13	-0.5
4,113,517	-				+0.6
4,113,517	-		PP_3619	0.18	-1.0
4,113,552	+		PP_3619	0.22	+0.4
4,113,604	+		PP_3619	0.28	-0.1
4,113,605	-		PP_3619	0.28	+0.5
4,113,605	-		PP_3619	0.28	-0.4
4,113,737	+		PP_3619	0.42	-1.2
4,113,808	-		PP_3619	0.50	+0.1
4,113,823	-		PP_3619	0.52	-0.9
4,113,823	-		PP_3619	0.52	+0.2
4,114,143	+		PP_3619	0.88	+0.5
4,114,144	-		PP_3619	0.88	-0.7
4,114,144	-		PP_3619	0.88	-0.1
4,114,144	-		PP_3619	0.88	-0.7
4,114,170	+				+0.4
4,114,170	+				-0.4
4,114,171	-				+1.2
4,114,171	-				+0.2
4,114,171	-				-0.2
4,114,242	-				+0.3
4,114,251	+				+0.3
4,114,252	-				-0.5
4,114,286	-				+0.1
4,114,354	+				-0.1
4,114,354	+				-0.6
4,114,354	+				-2.2
4,114,436	+				-0.4
4,114,436	+				+1.4
4,114,436	+				-0.8
4,114,437	-				-0.3
4,114,437	-				-0.1
4,114,437	-				-0.3
4,114,563	+				-1.1
4,114,564	-				-0.4
4,114,643	+		PP_3620	0.11	-1.6
4,114,660	+		PP_3620	0.12	-0.5
4,114,823	+		PP_3620	0.19	-1.5
4,114,823	+		PP_3620	0.19	-0.7
4,114,823	+		PP_3620	0.19	+0.1
4,114,824	-		PP_3620	0.19	-0.6
4,114,824	-		PP_3620	0.19	-1.0
4,114,824	-		PP_3620	0.19	-0.4
4,115,018	+		PP_3620	0.28	+0.0
4,115,018	+		PP_3620	0.28	-2.2
4,115,019	-		PP_3620	0.28	-0.7
4,115,030	+		PP_3620	0.29	-0.0
4,115,030	+		PP_3620	0.29	-0.1
4,115,030	+		PP_3620	0.29	+0.3
4,115,030	+		PP_3620	0.29	-0.4
4,115,030	+		PP_3620	0.29	-1.0
4,115,031	-		PP_3620	0.29	-0.0
4,115,031	-		PP_3620	0.29	-2.4
4,115,176	-		PP_3620	0.36	-1.0
4,115,651	+		PP_3620	0.57	+0.9
4,115,651	+		PP_3620	0.57	-0.8
4,115,652	-		PP_3620	0.57	-0.5
4,115,652	-		PP_3620	0.57	-0.3
4,115,697	+		PP_3620	0.59	+0.6
4,115,697	+		PP_3620	0.59	+0.9
4,115,697	+		PP_3620	0.59	-0.1
4,115,698	-		PP_3620	0.59	-1.0
4,115,729	+		PP_3620	0.61	+0.3
4,115,729	+		PP_3620	0.61	-0.9
4,115,729	+		PP_3620	0.61	+0.0
4,115,729	+		PP_3620	0.61	+0.2
4,115,730	-		PP_3620	0.61	-1.6
4,115,765	+		PP_3620	0.62	-1.4
4,115,765	+		PP_3620	0.62	-0.8
4,115,766	-		PP_3620	0.63	-1.2
4,115,766	-		PP_3620	0.63	-0.4
4,115,898	-		PP_3620	0.69	+0.6
4,115,974	-		PP_3620	0.72	-1.2
4,115,982	+		PP_3620	0.72	-0.3
4,115,983	-		PP_3620	0.72	-0.2
4,115,983	-		PP_3620	0.72	-2.4
4,115,983	-		PP_3620	0.72	-0.6
4,116,010	+		PP_3620	0.74	+0.3
4,116,010	+		PP_3620	0.74	-1.1
4,116,140	+		PP_3620	0.80	-1.2
4,116,140	+		PP_3620	0.80	-1.1
4,116,140	+		PP_3620	0.80	-0.8
4,116,140	+		PP_3620	0.80	-0.2
4,116,140	+		PP_3620	0.80	-1.1
4,116,140	+		PP_3620	0.80	-0.5
4,116,140	+		PP_3620	0.80	-0.9
4,116,140	+		PP_3620	0.80	-0.3
4,116,140	+		PP_3620	0.80	+0.0
4,116,140	+		PP_3620	0.80	-0.9
4,116,140	+		PP_3620	0.80	-0.1
4,116,140	+		PP_3620	0.80	-0.2
4,116,141	-		PP_3620	0.80	+0.2
4,116,141	-		PP_3620	0.80	-0.9
4,116,141	-		PP_3620	0.80	-0.5
4,116,141	-		PP_3620	0.80	-0.0
4,116,141	-		PP_3620	0.80	+0.1
4,116,141	-		PP_3620	0.80	-0.5
4,116,141	-		PP_3620	0.80	-0.9
4,116,141	-		PP_3620	0.80	-0.5
4,116,141	-		PP_3620	0.80	-0.9
4,116,141	-		PP_3620	0.80	-0.0
4,116,339	-		PP_3620	0.89	+1.0
4,116,397	-				-2.1
4,116,413	+				-0.9
4,116,414	-				-0.4
4,116,428	+				-0.4
4,116,505	-				+0.0
4,116,593	+				-0.5
4,116,704	-				+0.2
4,116,717	-				+0.4
4,116,717	-				+1.1
4,116,775	+				+0.5
4,116,801	+				+0.5
4,116,801	+				+1.4
4,116,801	+				+0.7
4,116,802	-				-0.5
4,116,802	-				-1.2
4,116,817	-				+1.8
4,116,863	+				-0.7
4,116,883	+				+0.0
4,116,883	+				+0.1
4,116,884	-				+0.5
4,116,884	-				+0.0
4,116,958	+		PP_3621	0.22	+0.1
4,116,958	+		PP_3621	0.22	-1.3
4,116,958	+		PP_3621	0.22	-0.2
4,116,958	+		PP_3621	0.22	-0.4
4,116,958	+		PP_3621	0.22	+0.8
4,116,959	-		PP_3621	0.23	-0.1
4,116,959	-		PP_3621	0.23	-0.1
4,117,258	+		PP_3621	0.88	+0.5
4,117,258	+		PP_3621	0.88	-0.7
4,117,258	+		PP_3621	0.88	-1.0
4,117,259	-		PP_3621	0.88	-0.3
4,117,423	+				-0.3
4,117,423	+				-0.9
4,117,423	+				+0.0
4,117,559	+		PP_3622	0.11	+0.5
4,117,559	+		PP_3622	0.11	+0.9
4,117,560	-		PP_3622	0.11	-0.5