Strain Fitness in Pseudomonas putida KT2440 around PP_1369

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
1,557,259	+				-0.1
1,557,265	+				+1.6
1,557,265	+				+1.6
1,557,265	+				-0.5
1,557,266	-				+0.6
1,557,268	+				+0.8
1,557,269	-				+0.1
1,557,269	-				+0.4
1,557,273	-				-1.1
1,557,285	+		PP_1368	0.11	+1.8
1,557,444	+		PP_1368	0.27	+0.1
1,557,469	+		PP_1368	0.29	+1.2
1,557,469	+		PP_1368	0.29	+0.3
1,557,470	-		PP_1368	0.29	+0.6
1,557,470	-		PP_1368	0.29	-1.0
1,557,470	-		PP_1368	0.29	+1.0
1,557,482	-		PP_1368	0.30	+0.6
1,557,711	+		PP_1368	0.53	+0.5
1,558,047	+		PP_1368	0.87	+0.4
1,558,047	+		PP_1368	0.87	+0.8
1,558,048	-		PP_1368	0.87	-0.5
1,558,050	+		PP_1368	0.88	-0.4
1,558,051	-		PP_1368	0.88	+1.2
1,558,258	-		PP_1369	0.12	+0.3
1,558,286	+		PP_1369	0.16	+0.5
1,558,287	-		PP_1369	0.16	+0.6
1,558,454	-		PP_1369	0.39	-0.3
1,558,454	-		PP_1369	0.39	+0.5
1,558,454	-		PP_1369	0.39	+3.0
1,558,454	-		PP_1369	0.39	+0.5
1,558,611	+		PP_1369	0.60	+0.6
1,558,632	+		PP_1369	0.63	+0.4
1,558,632	+		PP_1369	0.63	+2.1
1,558,633	-		PP_1369	0.63	+0.2
1,558,633	-		PP_1369	0.63	+0.6
1,558,650	+		PP_1369	0.66	+1.3
1,558,695	+		PP_1369	0.72	+0.4
1,558,695	+		PP_1369	0.72	+0.8
1,558,695	+		PP_1369	0.72	+1.1
1,558,844	+				+1.8
1,558,858	-				+0.6
1,558,993	-				-0.6
1,559,001	-				-0.2
1,559,011	+				+1.2
1,559,011	+				+0.8
1,559,011	+				+0.5
1,559,011	+				+0.7
1,559,012	-				+0.5
1,559,012	-				-0.7
1,559,012	-				+1.4
1,559,022	+				+0.8
1,559,022	+				+0.9
1,559,022	+				+1.1
1,559,022	+				+0.3
1,559,023	-				+0.5
1,559,353	-		PP_1370	0.38	-0.9
1,559,353	-		PP_1370	0.38	-0.0
1,559,478	+		PP_1370	0.49	+0.6
1,559,478	+		PP_1370	0.49	-0.4
1,559,478	+		PP_1370	0.49	+1.4
1,559,478	+		PP_1370	0.49	-0.6
1,559,478	+		PP_1370	0.49	+0.4
1,559,478	+		PP_1370	0.49	+0.5
1,559,478	+		PP_1370	0.49	+0.1
1,559,478	+		PP_1370	0.49	+0.1
1,559,479	-		PP_1370	0.49	+0.1
1,559,479	-		PP_1370	0.49	+0.2
1,559,479	-		PP_1370	0.49	-0.5
1,559,479	-		PP_1370	0.49	+0.7
1,559,565	+		PP_1370	0.57	+1.2
1,559,565	+		PP_1370	0.57	+1.4
1,559,617	+		PP_1370	0.62	+0.5
1,559,632	+		PP_1370	0.63	-0.4
1,559,633	-		PP_1370	0.63	+0.4
1,559,701	+		PP_1370	0.69	+0.6
1,559,764	+		PP_1370	0.75	+0.7
1,559,765	-		PP_1370	0.75	+0.4
1,559,810	+		PP_1370	0.79	+0.8
1,559,810	+				+4.3
1,559,810	+		PP_1370	0.79	+0.6
1,559,878	-		PP_1370	0.85	+0.6
1,559,878	-		PP_1370	0.85	-0.0
1,559,884	+		PP_1370	0.85	-0.4
1,559,884	+		PP_1370	0.85	+0.8
1,559,884	+		PP_1370	0.85	+0.0
1,559,884	+		PP_1370	0.85	+1.1
1,559,885	-		PP_1370	0.85	+0.8
1,559,885	-		PP_1370	0.85	+1.4