Strain Fitness in Pseudomonas putida KT2440 around PP_0331

Experiment: P. put PUT 10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0329 and PP_0330 are separated by 193 nucleotidesPP_0330 and PP_0331 are separated by 20 nucleotidesPP_0331 and PP_0332 are separated by 211 nucleotides PP_0329: PP_0329 - conserved protein of unknown function, at 396,022 to 396,945 _0329 PP_0330: PP_0330 - hypothetical protein, at 397,139 to 397,714 _0330 PP_0331: PP_0331 - conserved protein of unknown function, at 397,735 to 398,484 _0331 PP_0332: PP_0332 - putative Acyltransferase, at 398,696 to 399,583 _0332 Position (kb) 397 398 399Strain fitness (log2 ratio) -2 -1 0 1 2 3at 396.912 kb on - strandat 396.917 kb on + strandat 396.918 kb on - strandat 396.927 kb on + strandat 396.982 kb on + strandat 396.983 kb on - strandat 396.983 kb on - strandat 396.983 kb on - strandat 396.998 kb on + strandat 397.030 kb on + strandat 397.049 kb on + strandat 397.049 kb on + strandat 397.049 kb on + strandat 397.050 kb on - strandat 397.050 kb on - strandat 397.050 kb on - strandat 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.392 kb on - strand, within PP_0330at 397.392 kb on - strand, within PP_0330at 397.392 kb on - strand, within PP_0330at 397.444 kb on + strand, within PP_0330at 397.444 kb on + strand, within PP_0330at 397.445 kb on - strand, within PP_0330at 397.454 kb on - strand, within PP_0330at 397.543 kb on + strand, within PP_0330at 397.544 kb on - strand, within PP_0330at 397.544 kb on - strand, within PP_0330at 397.622 kb on + strand, within PP_0330at 397.623 kb on - strand, within PP_0330at 397.623 kb on - strand, within PP_0330at 397.739 kb on - strandat 397.830 kb on - strand, within PP_0331at 397.895 kb on + strand, within PP_0331at 397.896 kb on - strand, within PP_0331at 397.939 kb on - strand, within PP_0331at 397.939 kb on - strand, within PP_0331at 397.940 kb on + strand, within PP_0331at 398.004 kb on - strand, within PP_0331at 398.018 kb on - strand, within PP_0331at 398.099 kb on - strand, within PP_0331at 398.099 kb on - strand, within PP_0331at 398.208 kb on + strand, within PP_0331at 398.244 kb on - strand, within PP_0331at 398.244 kb on - strand, within PP_0331at 398.256 kb on + strandat 398.256 kb on + strand, within PP_0331at 398.259 kb on - strand, within PP_0331at 398.259 kb on - strand, within PP_0331at 398.259 kb on - strand, within PP_0331at 398.321 kb on + strandat 398.321 kb on + strand, within PP_0331at 398.322 kb on - strand, within PP_0331at 398.322 kb on - strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.392 kb on + strand, within PP_0331at 398.404 kb on - strand, within PP_0331at 398.429 kb on + strandat 398.438 kb on + strandat 398.438 kb on + strandat 398.438 kb on + strandat 398.439 kb on - strandat 398.491 kb on + strandat 398.491 kb on + strandat 398.491 kb on + strandat 398.492 kb on - strandat 398.492 kb on - strandat 398.492 kb on - strandat 398.523 kb on + strandat 398.523 kb on + strandat 398.549 kb on + strandat 398.549 kb on + strandat 398.549 kb on + strandat 398.596 kb on + strandat 398.597 kb on - strandat 398.608 kb on + strandat 398.616 kb on + strandat 398.616 kb on + strandat 398.617 kb on - strandat 398.623 kb on + strandat 398.624 kb on - strandat 398.624 kb on - strandat 398.640 kb on + strandat 398.641 kb on - strandat 398.641 kb on - strandat 398.641 kb on - strandat 398.649 kb on + strandat 398.650 kb on - strandat 398.860 kb on + strand, within PP_0332at 398.900 kb on - strand, within PP_0332at 399.001 kb on - strand, within PP_0332at 399.007 kb on - strand, within PP_0332at 399.061 kb on - strand, within PP_0332at 399.265 kb on + strand, within PP_0332at 399.265 kb on + strand, within PP_0332at 399.266 kb on - strand, within PP_0332

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1
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396,912 - -0.8
396,917 + +0.3
396,918 - +0.3
396,927 + -2.3
396,982 + +3.1
396,983 - -1.7
396,983 - +0.0
396,983 - -0.4
396,998 + +0.3
397,030 + +0.5
397,049 + -0.9
397,049 + +0.3
397,049 + -0.0
397,050 - +0.4
397,050 - -0.4
397,050 - +0.8
397,379 - PP_0330 0.42 -0.7
397,379 - PP_0330 0.42 +0.3
397,379 - PP_0330 0.42 -1.3
397,379 - PP_0330 0.42 +0.5
397,379 - PP_0330 0.42 +0.2
397,392 - PP_0330 0.44 -0.6
397,392 - PP_0330 0.44 +0.1
397,392 - PP_0330 0.44 +1.6
397,444 + PP_0330 0.53 +0.6
397,444 + PP_0330 0.53 -0.1
397,445 - PP_0330 0.53 +0.9
397,454 - PP_0330 0.55 -0.1
397,543 + PP_0330 0.70 -0.2
397,544 - PP_0330 0.70 -0.7
397,544 - PP_0330 0.70 +0.9
397,622 + PP_0330 0.84 +0.1
397,623 - PP_0330 0.84 -0.1
397,623 - PP_0330 0.84 -0.3
397,739 - -0.3
397,830 - PP_0331 0.13 -0.5
397,895 + PP_0331 0.21 +0.1
397,896 - PP_0331 0.21 +0.5
397,939 - PP_0331 0.27 -0.3
397,939 - PP_0331 0.27 -0.4
397,940 + PP_0331 0.27 -1.2
398,004 - PP_0331 0.36 -1.1
398,018 - PP_0331 0.38 -1.8
398,099 - PP_0331 0.49 -1.8
398,099 - PP_0331 0.49 -0.2
398,208 + PP_0331 0.63 +0.1
398,244 - PP_0331 0.68 -0.7
398,244 - PP_0331 0.68 -0.3
398,256 + +2.1
398,256 + PP_0331 0.69 -0.3
398,259 - PP_0331 0.70 +2.1
398,259 - PP_0331 0.70 +0.1
398,259 - PP_0331 0.70 -2.2
398,321 + +1.1
398,321 + PP_0331 0.78 +0.0
398,322 - PP_0331 0.78 -0.0
398,322 - PP_0331 0.78 +0.2
398,348 + PP_0331 0.82 -0.6
398,348 + PP_0331 0.82 +0.8
398,348 + PP_0331 0.82 +0.1
398,348 + PP_0331 0.82 -1.0
398,348 + PP_0331 0.82 -2.4
398,348 + PP_0331 0.82 +0.8
398,348 + PP_0331 0.82 -1.3
398,349 - PP_0331 0.82 -0.9
398,349 - PP_0331 0.82 -0.5
398,349 - PP_0331 0.82 -0.4
398,349 - PP_0331 0.82 +0.2
398,349 - PP_0331 0.82 -0.8
398,392 + PP_0331 0.88 -0.5
398,404 - PP_0331 0.89 +0.0
398,429 + +0.2
398,438 + -0.2
398,438 + -0.3
398,438 + -0.2
398,439 - +0.8
398,491 + +0.3
398,491 + +0.1
398,491 + +0.2
398,492 - -0.9
398,492 - -0.1
398,492 - +0.4
398,523 + -0.6
398,523 + +0.1
398,549 + -0.1
398,549 + -0.1
398,549 + -0.4
398,596 + -0.5
398,597 - +1.2
398,608 + -0.3
398,616 + -0.1
398,616 + -0.1
398,617 - +0.1
398,623 + -0.8
398,624 - +0.3
398,624 - -1.0
398,640 + -0.3
398,641 - +0.4
398,641 - -1.6
398,641 - -1.2
398,649 + -0.6
398,650 - -0.2
398,860 + PP_0332 0.18 -0.2
398,900 - PP_0332 0.23 -0.3
399,001 - PP_0332 0.34 -0.4
399,007 - PP_0332 0.35 +0.5
399,061 - PP_0332 0.41 -0.1
399,265 + PP_0332 0.64 +0.0
399,265 + PP_0332 0.64 -0.2
399,266 - PP_0332 0.64 +0.3

Or see this region's nucleotide sequence