Strain Fitness in Pseudomonas putida KT2440 around PP_0046

Experiment: P. put PUT 10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0045 and PP_0046 are separated by 404 nucleotidesPP_0046 and PP_0047 are separated by 489 nucleotides PP_0045: PP_0045 - cobalt-zinc-cadmium resistance protein, at 50,718 to 51,989 _0045 PP_0046: PP_0046 - tyrosine-specific outer membrane porin D, at 52,394 to 53,737 _0046 PP_0047: PP_0047 - response regulator, at 54,227 to 54,901 _0047 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 51.464 kb on + strand, within PP_0045at 51.465 kb on - strand, within PP_0045at 51.465 kb on - strand, within PP_0045at 51.465 kb on - strand, within PP_0045at 51.612 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.641 kb on - strand, within PP_0045at 51.722 kb on + strand, within PP_0045at 51.723 kb on - strand, within PP_0045at 51.745 kb on + strand, within PP_0045at 51.745 kb on + strand, within PP_0045at 51.746 kb on - strand, within PP_0045at 51.768 kb on - strand, within PP_0045at 51.964 kb on - strandat 51.979 kb on + strandat 51.980 kb on - strandat 52.064 kb on + strandat 52.064 kb on + strandat 52.093 kb on + strandat 52.093 kb on + strandat 52.094 kb on - strandat 52.237 kb on + strandat 52.237 kb on + strandat 52.237 kb on + strandat 52.261 kb on + strandat 52.262 kb on - strandat 52.293 kb on - strandat 52.311 kb on - strandat 52.336 kb on + strandat 52.336 kb on + strandat 52.336 kb on + strandat 52.337 kb on - strandat 52.355 kb on - strandat 52.363 kb on + strandat 52.408 kb on - strandat 52.415 kb on + strandat 52.415 kb on + strandat 52.416 kb on - strandat 52.448 kb on + strandat 52.448 kb on + strandat 52.449 kb on - strandat 52.449 kb on - strandat 52.453 kb on + strandat 52.523 kb on - strandat 52.568 kb on + strandat 52.568 kb on + strand, within PP_0046at 52.569 kb on - strand, within PP_0046at 52.588 kb on + strand, within PP_0046at 52.649 kb on - strand, within PP_0046at 52.657 kb on + strand, within PP_0046at 52.658 kb on - strand, within PP_0046at 52.735 kb on + strand, within PP_0046at 52.735 kb on + strand, within PP_0046at 52.762 kb on + strand, within PP_0046at 52.762 kb on + strand, within PP_0046at 52.763 kb on - strand, within PP_0046at 52.787 kb on + strand, within PP_0046at 52.787 kb on + strand, within PP_0046at 52.787 kb on + strand, within PP_0046at 52.787 kb on + strand, within PP_0046at 53.024 kb on + strand, within PP_0046at 53.025 kb on - strand, within PP_0046at 53.105 kb on + strand, within PP_0046at 53.106 kb on - strand, within PP_0046at 53.138 kb on + strand, within PP_0046at 53.139 kb on - strand, within PP_0046at 53.141 kb on + strand, within PP_0046at 53.141 kb on + strand, within PP_0046at 53.142 kb on - strand, within PP_0046at 53.142 kb on - strand, within PP_0046at 53.163 kb on - strand, within PP_0046at 53.205 kb on - strand, within PP_0046at 53.207 kb on + strand, within PP_0046at 53.208 kb on - strand, within PP_0046at 53.208 kb on - strand, within PP_0046at 53.217 kb on + strand, within PP_0046at 53.218 kb on - strand, within PP_0046at 53.227 kb on + strand, within PP_0046at 53.227 kb on + strand, within PP_0046at 53.228 kb on - strand, within PP_0046at 53.345 kb on + strand, within PP_0046at 53.346 kb on - strand, within PP_0046at 53.390 kb on + strand, within PP_0046at 53.390 kb on + strand, within PP_0046at 53.391 kb on - strand, within PP_0046at 53.435 kb on + strand, within PP_0046at 53.456 kb on + strand, within PP_0046at 53.514 kb on - strand, within PP_0046at 53.534 kb on + strand, within PP_0046at 53.535 kb on - strand, within PP_0046at 53.535 kb on - strand, within PP_0046at 53.606 kb on + strandat 53.607 kb on - strandat 53.707 kb on - strandat 53.791 kb on + strandat 53.813 kb on + strandat 53.828 kb on + strandat 53.898 kb on - strandat 53.898 kb on - strandat 54.107 kb on - strandat 54.306 kb on + strand, within PP_0047at 54.306 kb on + strand, within PP_0047at 54.307 kb on - strand, within PP_0047at 54.381 kb on + strand, within PP_0047at 54.381 kb on + strand, within PP_0047at 54.381 kb on + strand, within PP_0047at 54.382 kb on - strand, within PP_0047at 54.449 kb on - strand, within PP_0047at 54.600 kb on + strand, within PP_0047at 54.601 kb on - strand, within PP_0047at 54.689 kb on + strand, within PP_0047at 54.699 kb on + strand, within PP_0047at 54.718 kb on + strand, within PP_0047

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 1
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51,464 + PP_0045 0.59 -0.5
51,465 - PP_0045 0.59 -0.3
51,465 - PP_0045 0.59 +0.1
51,465 - PP_0045 0.59 -0.1
51,612 + PP_0045 0.70 -1.6
51,640 + PP_0045 0.72 -0.7
51,640 + PP_0045 0.72 -0.8
51,640 + PP_0045 0.72 +0.1
51,640 + PP_0045 0.72 -0.5
51,640 + PP_0045 0.72 -0.3
51,640 + PP_0045 0.72 -0.1
51,641 - PP_0045 0.73 +0.3
51,722 + PP_0045 0.79 -0.6
51,723 - PP_0045 0.79 -0.1
51,745 + PP_0045 0.81 -1.5
51,745 + PP_0045 0.81 +0.7
51,746 - PP_0045 0.81 +0.3
51,768 - PP_0045 0.83 -0.1
51,964 - -0.7
51,979 + -0.2
51,980 - -0.7
52,064 + -0.1
52,064 + -0.4
52,093 + -0.4
52,093 + -0.3
52,094 - -1.6
52,237 + -1.4
52,237 + -0.1
52,237 + +0.5
52,261 + -1.0
52,262 - -0.3
52,293 - +0.0
52,311 - -0.6
52,336 + -0.4
52,336 + +0.0
52,336 + -0.0
52,337 - +0.1
52,355 - +0.1
52,363 + +0.5
52,408 - -0.2
52,415 + -0.1
52,415 + -0.6
52,416 - +0.2
52,448 + +0.4
52,448 + +0.4
52,449 - +0.3
52,449 - -0.3
52,453 + -0.5
52,523 - -0.8
52,568 + +1.6
52,568 + PP_0046 0.13 -0.4
52,569 - PP_0046 0.13 -0.8
52,588 + PP_0046 0.14 +0.1
52,649 - PP_0046 0.19 -0.2
52,657 + PP_0046 0.20 -1.4
52,658 - PP_0046 0.20 -0.9
52,735 + PP_0046 0.25 +0.7
52,735 + PP_0046 0.25 -0.4
52,762 + PP_0046 0.27 -0.6
52,762 + PP_0046 0.27 +0.4
52,763 - PP_0046 0.27 -0.6
52,787 + PP_0046 0.29 -0.7
52,787 + PP_0046 0.29 +0.1
52,787 + PP_0046 0.29 +1.0
52,787 + PP_0046 0.29 -1.3
53,024 + PP_0046 0.47 -1.3
53,025 - PP_0046 0.47 +0.1
53,105 + PP_0046 0.53 -0.6
53,106 - PP_0046 0.53 -0.6
53,138 + PP_0046 0.55 -1.7
53,139 - PP_0046 0.55 -1.9
53,141 + PP_0046 0.56 -0.3
53,141 + PP_0046 0.56 -0.5
53,142 - PP_0046 0.56 -0.6
53,142 - PP_0046 0.56 -0.4
53,163 - PP_0046 0.57 -1.1
53,205 - PP_0046 0.60 +0.3
53,207 + PP_0046 0.60 -0.9
53,208 - PP_0046 0.61 -0.1
53,208 - PP_0046 0.61 +0.8
53,217 + PP_0046 0.61 +0.1
53,218 - PP_0046 0.61 -1.7
53,227 + PP_0046 0.62 +0.3
53,227 + PP_0046 0.62 -1.0
53,228 - PP_0046 0.62 +0.0
53,345 + PP_0046 0.71 +0.5
53,346 - PP_0046 0.71 -0.4
53,390 + PP_0046 0.74 -1.4
53,390 + PP_0046 0.74 -0.4
53,391 - PP_0046 0.74 -1.1
53,435 + PP_0046 0.77 -0.1
53,456 + PP_0046 0.79 +0.1
53,514 - PP_0046 0.83 -0.7
53,534 + PP_0046 0.85 +1.2
53,535 - PP_0046 0.85 +0.7
53,535 - PP_0046 0.85 -1.5
53,606 + -0.7
53,607 - +0.4
53,707 - -0.3
53,791 + -0.2
53,813 + -1.2
53,828 + -0.8
53,898 - +0.9
53,898 - -0.1
54,107 - +0.4
54,306 + PP_0047 0.12 -0.9
54,306 + PP_0047 0.12 +0.9
54,307 - PP_0047 0.12 +0.3
54,381 + PP_0047 0.23 +0.4
54,381 + PP_0047 0.23 -0.4
54,381 + PP_0047 0.23 -0.7
54,382 - PP_0047 0.23 +0.4
54,449 - PP_0047 0.33 -0.3
54,600 + PP_0047 0.55 -0.0
54,601 - PP_0047 0.55 -1.3
54,689 + PP_0047 0.68 -0.1
54,699 + PP_0047 0.70 -0.3
54,718 + PP_0047 0.73 +0.4

Or see this region's nucleotide sequence