Experiment: P. put PUT 10 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0541 and PP_0542 are separated by 107 nucleotides PP_0542 and PP_0543 are separated by 8 nucleotides PP_0543 and PP_0544 are separated by 46 nucleotides
PP_0541: PP_0541 - Acetyltransferase, GNAT family, at 627,410 to 627,868
_0541
PP_0542: PP_0542 - ethanolamine ammonia-lyase, beta-subunit, at 627,976 to 628,794
_0542
PP_0543: PP_0543 - ethanolamine ammonia-lyase, alpha-subunit, at 628,803 to 630,197
_0543
PP_0544: PP_0544 - Ethanolamine transporter, at 630,244 to 631,692
_0544
Position (kb) 628
629
630
631 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.807 kb on + strand, within PP_0541 at 627.807 kb on + strand, within PP_0541 at 627.943 kb on + strand at 627.944 kb on - strand at 628.035 kb on + strand at 628.057 kb on + strand at 628.058 kb on - strand, within PP_0542 at 628.103 kb on + strand, within PP_0542 at 628.103 kb on + strand, within PP_0542 at 628.104 kb on - strand, within PP_0542 at 628.104 kb on - strand, within PP_0542 at 628.130 kb on + strand, within PP_0542 at 628.202 kb on + strand, within PP_0542 at 628.211 kb on + strand, within PP_0542 at 628.211 kb on + strand, within PP_0542 at 628.211 kb on + strand, within PP_0542 at 628.212 kb on - strand, within PP_0542 at 628.545 kb on - strand, within PP_0542 at 628.545 kb on - strand, within PP_0542 at 628.777 kb on - strand at 628.804 kb on + strand at 628.804 kb on + strand at 628.805 kb on - strand at 628.981 kb on + strand, within PP_0543 at 628.982 kb on - strand, within PP_0543 at 628.982 kb on - strand, within PP_0543 at 629.098 kb on + strand, within PP_0543 at 629.098 kb on + strand, within PP_0543 at 629.099 kb on - strand, within PP_0543 at 629.099 kb on - strand, within PP_0543 at 629.099 kb on - strand, within PP_0543 at 629.099 kb on - strand, within PP_0543 at 629.185 kb on + strand, within PP_0543 at 629.185 kb on + strand, within PP_0543 at 629.186 kb on - strand, within PP_0543 at 629.186 kb on - strand, within PP_0543 at 629.186 kb on - strand, within PP_0543 at 629.186 kb on - strand, within PP_0543 at 629.186 kb on - strand, within PP_0543 at 629.186 kb on - strand, within PP_0543 at 629.186 kb on - strand, within PP_0543 at 629.186 kb on - strand, within PP_0543 at 629.257 kb on + strand, within PP_0543 at 629.258 kb on - strand, within PP_0543 at 629.258 kb on - strand, within PP_0543 at 629.338 kb on + strand, within PP_0543 at 629.389 kb on + strand, within PP_0543 at 629.389 kb on + strand, within PP_0543 at 629.389 kb on + strand, within PP_0543 at 629.390 kb on - strand, within PP_0543 at 629.549 kb on - strand, within PP_0543 at 629.648 kb on - strand, within PP_0543 at 629.648 kb on - strand, within PP_0543 at 630.197 kb on + strand at 630.323 kb on + strand at 630.324 kb on - strand at 630.324 kb on - strand at 630.335 kb on + strand at 630.336 kb on - strand at 630.336 kb on - strand at 630.336 kb on - strand at 630.343 kb on + strand at 630.344 kb on - strand at 630.348 kb on - strand at 630.353 kb on + strand at 630.353 kb on + strand at 630.353 kb on + strand at 630.353 kb on + strand at 630.354 kb on - strand at 630.467 kb on + strand, within PP_0544 at 630.530 kb on + strand, within PP_0544 at 630.530 kb on + strand, within PP_0544 at 630.530 kb on + strand, within PP_0544 at 630.531 kb on - strand, within PP_0544 at 630.531 kb on - strand, within PP_0544 at 630.531 kb on - strand, within PP_0544 at 630.714 kb on - strand, within PP_0544 at 630.714 kb on - strand, within PP_0544 at 630.714 kb on - strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.800 kb on + strand, within PP_0544 at 630.801 kb on - strand, within PP_0544 at 631.013 kb on + strand, within PP_0544 at 631.130 kb on - strand, within PP_0544
Per-strain Table
Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 10 remove 627,807 + PP_0541 0.86 -1.7 627,807 + PP_0541 0.86 -0.7 627,943 + -1.1 627,944 - +1.7 628,035 + -0.5 628,057 + +0.1 628,058 - PP_0542 0.10 -0.1 628,103 + PP_0542 0.16 +0.6 628,103 + PP_0542 0.16 -0.2 628,104 - PP_0542 0.16 -1.1 628,104 - PP_0542 0.16 -2.6 628,130 + PP_0542 0.19 +0.7 628,202 + PP_0542 0.28 -0.2 628,211 + PP_0542 0.29 -0.9 628,211 + PP_0542 0.29 -0.6 628,211 + PP_0542 0.29 -0.3 628,212 - PP_0542 0.29 -0.1 628,545 - PP_0542 0.69 +0.9 628,545 - PP_0542 0.69 +1.0 628,777 - -0.9 628,804 + -0.1 628,804 + +0.7 628,805 - +0.7 628,981 + PP_0543 0.13 +0.1 628,982 - PP_0543 0.13 +0.9 628,982 - PP_0543 0.13 +0.5 629,098 + PP_0543 0.21 -0.8 629,098 + PP_0543 0.21 +0.1 629,099 - PP_0543 0.21 +0.1 629,099 - PP_0543 0.21 +0.7 629,099 - PP_0543 0.21 -3.6 629,099 - PP_0543 0.21 +1.7 629,185 + PP_0543 0.27 -0.9 629,185 + PP_0543 0.27 +0.2 629,186 - PP_0543 0.27 +0.8 629,186 - PP_0543 0.27 +1.9 629,186 - PP_0543 0.27 +0.1 629,186 - PP_0543 0.27 -0.2 629,186 - PP_0543 0.27 +1.2 629,186 - PP_0543 0.27 +1.0 629,186 - PP_0543 0.27 -0.0 629,186 - PP_0543 0.27 -0.7 629,257 + PP_0543 0.33 +0.4 629,258 - PP_0543 0.33 +0.7 629,258 - PP_0543 0.33 -0.1 629,338 + PP_0543 0.38 -0.1 629,389 + PP_0543 0.42 -0.5 629,389 + PP_0543 0.42 +1.1 629,389 + PP_0543 0.42 -0.0 629,390 - PP_0543 0.42 -1.1 629,549 - PP_0543 0.53 -0.3 629,648 - PP_0543 0.61 +1.9 629,648 - PP_0543 0.61 +0.5 630,197 + -0.5 630,323 + -2.9 630,324 - +0.6 630,324 - +0.5 630,335 + +0.4 630,336 - -0.2 630,336 - +1.1 630,336 - -1.4 630,343 + +2.0 630,344 - +1.4 630,348 - +1.9 630,353 + -0.6 630,353 + +0.2 630,353 + -0.2 630,353 + -0.0 630,354 - +0.1 630,467 + PP_0544 0.15 +0.6 630,530 + PP_0544 0.20 +0.5 630,530 + PP_0544 0.20 -2.8 630,530 + PP_0544 0.20 +1.2 630,531 - PP_0544 0.20 -0.3 630,531 - PP_0544 0.20 -0.4 630,531 - PP_0544 0.20 +0.8 630,714 - PP_0544 0.32 -3.0 630,714 - PP_0544 0.32 +0.2 630,714 - PP_0544 0.32 -0.1 630,719 + PP_0544 0.33 -0.1 630,719 + PP_0544 0.33 -0.7 630,719 + PP_0544 0.33 +0.0 630,719 + PP_0544 0.33 +0.8 630,719 + PP_0544 0.33 -0.2 630,719 + PP_0544 0.33 +1.3 630,719 + PP_0544 0.33 -0.5 630,719 + PP_0544 0.33 +0.6 630,719 + PP_0544 0.33 -0.8 630,719 + PP_0544 0.33 +1.3 630,719 + PP_0544 0.33 -0.3 630,719 + PP_0544 0.33 -0.4 630,720 - PP_0544 0.33 -0.1 630,720 - PP_0544 0.33 +0.6 630,720 - PP_0544 0.33 -0.9 630,720 - PP_0544 0.33 +0.5 630,720 - PP_0544 0.33 -0.9 630,720 - PP_0544 0.33 -0.8 630,720 - PP_0544 0.33 +0.3 630,720 - PP_0544 0.33 +0.9 630,720 - PP_0544 0.33 -3.2 630,720 - PP_0544 0.33 +0.1 630,720 - -0.3 630,720 - PP_0544 0.33 +0.2 630,720 - PP_0544 0.33 +0.7 630,720 - PP_0544 0.33 +0.4 630,800 + PP_0544 0.38 -0.2 630,801 - PP_0544 0.38 -0.5 631,013 + PP_0544 0.53 -3.1 631,130 - PP_0544 0.61 +0.7
Or see this region's nucleotide sequence