Strain Fitness in Pseudomonas putida KT2440 around PP_5220

Experiment: P. put South MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5219 and PP_5220 are separated by 106 nucleotidesPP_5220 and PP_5221 are separated by 203 nucleotidesPP_5221 and PP_5222 are separated by 130 nucleotides PP_5219: PP_5219 - conserved membrane protein of unknown function, at 5,953,707 to 5,955,002 _5219 PP_5220: PP_5220 - putative hydrolase, at 5,955,109 to 5,955,774 _5220 PP_5221: PP_5221 - conserved protein of unknown function, UPF0178 family, at 5,955,978 to 5,956,466 _5221 PP_5222: PP_5222 - adenylate cyclase, at 5,956,597 to 5,959,452 _5222 Position (kb) 5955 5956Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5954.167 kb on + strand, within PP_5219at 5954.168 kb on - strand, within PP_5219at 5954.216 kb on + strand, within PP_5219at 5954.216 kb on + strand, within PP_5219at 5954.217 kb on - strand, within PP_5219at 5954.217 kb on - strand, within PP_5219at 5954.272 kb on + strand, within PP_5219at 5954.273 kb on - strand, within PP_5219at 5954.273 kb on - strand, within PP_5219at 5954.292 kb on + strand, within PP_5219at 5954.404 kb on + strand, within PP_5219at 5954.405 kb on - strand, within PP_5219at 5954.405 kb on - strand, within PP_5219at 5954.405 kb on - strand, within PP_5219at 5954.419 kb on + strand, within PP_5219at 5954.419 kb on + strand, within PP_5219at 5954.419 kb on + strand, within PP_5219at 5954.419 kb on + strand, within PP_5219at 5954.419 kb on + strand, within PP_5219at 5954.420 kb on - strand, within PP_5219at 5954.420 kb on - strand, within PP_5219at 5954.498 kb on + strand, within PP_5219at 5954.499 kb on - strand, within PP_5219at 5954.524 kb on + strand, within PP_5219at 5954.593 kb on + strand, within PP_5219at 5954.594 kb on - strand, within PP_5219at 5954.653 kb on + strand, within PP_5219at 5954.653 kb on + strand, within PP_5219at 5954.653 kb on + strand, within PP_5219at 5954.654 kb on - strand, within PP_5219at 5954.654 kb on - strand, within PP_5219at 5954.728 kb on + strand, within PP_5219at 5954.728 kb on + strand, within PP_5219at 5954.729 kb on - strand, within PP_5219at 5954.729 kb on - strand, within PP_5219at 5954.729 kb on - strand, within PP_5219at 5954.731 kb on + strand, within PP_5219at 5954.731 kb on + strand, within PP_5219at 5954.731 kb on + strand, within PP_5219at 5954.732 kb on - strand, within PP_5219at 5954.732 kb on - strand, within PP_5219at 5954.744 kb on - strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.953 kb on - strandat 5954.953 kb on - strandat 5954.953 kb on - strandat 5954.959 kb on - strandat 5954.979 kb on + strandat 5954.980 kb on - strandat 5954.991 kb on + strandat 5954.991 kb on + strandat 5954.991 kb on + strandat 5954.992 kb on - strandat 5955.035 kb on - strandat 5955.035 kb on - strandat 5955.058 kb on - strandat 5955.077 kb on + strandat 5955.107 kb on + strandat 5955.107 kb on + strandat 5955.107 kb on + strandat 5955.108 kb on - strandat 5955.129 kb on - strandat 5955.260 kb on + strand, within PP_5220at 5955.260 kb on + strand, within PP_5220at 5955.260 kb on + strand, within PP_5220at 5955.260 kb on + strand, within PP_5220at 5955.260 kb on + strand, within PP_5220at 5955.260 kb on + strand, within PP_5220at 5955.260 kb on + strand, within PP_5220at 5955.261 kb on - strand, within PP_5220at 5955.261 kb on - strand, within PP_5220at 5955.261 kb on - strand, within PP_5220at 5955.261 kb on - strand, within PP_5220at 5955.261 kb on - strand, within PP_5220at 5955.261 kb on - strand, within PP_5220at 5955.261 kb on - strand, within PP_5220at 5955.261 kb on - strandat 5955.261 kb on - strand, within PP_5220at 5955.305 kb on + strand, within PP_5220at 5955.305 kb on + strand, within PP_5220at 5955.306 kb on - strand, within PP_5220at 5955.306 kb on - strand, within PP_5220at 5955.306 kb on - strand, within PP_5220at 5955.306 kb on - strand, within PP_5220at 5955.306 kb on - strand, within PP_5220at 5955.642 kb on - strand, within PP_5220at 5955.642 kb on - strand, within PP_5220at 5955.642 kb on - strand, within PP_5220at 5955.691 kb on + strand, within PP_5220at 5955.691 kb on + strand, within PP_5220at 5955.692 kb on - strand, within PP_5220at 5955.733 kb on + strandat 5955.733 kb on + strandat 5955.772 kb on + strandat 5955.772 kb on + strandat 5955.777 kb on + strandat 5955.778 kb on - strandat 5955.778 kb on - strandat 5955.778 kb on - strandat 5955.778 kb on - strandat 5955.898 kb on - strandat 5956.048 kb on + strand, within PP_5221at 5956.252 kb on + strand, within PP_5221at 5956.252 kb on + strand, within PP_5221at 5956.253 kb on - strand, within PP_5221at 5956.422 kb on + strandat 5956.422 kb on + strandat 5956.423 kb on - strandat 5956.423 kb on - strandat 5956.423 kb on - strandat 5956.442 kb on + strandat 5956.442 kb on + strandat 5956.442 kb on + strandat 5956.442 kb on + strandat 5956.443 kb on - strandat 5956.443 kb on - strandat 5956.443 kb on - strandat 5956.529 kb on + strandat 5956.529 kb on + strandat 5956.529 kb on + strandat 5956.742 kb on + strandat 5956.742 kb on + strandat 5956.742 kb on + strandat 5956.742 kb on + strandat 5956.742 kb on + strandat 5956.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put South MOI 1
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5,954,167 + PP_5219 0.35 -0.3
5,954,168 - PP_5219 0.36 -0.2
5,954,216 + PP_5219 0.39 -0.8
5,954,216 + PP_5219 0.39 -0.4
5,954,217 - PP_5219 0.39 +0.4
5,954,217 - PP_5219 0.39 +0.4
5,954,272 + PP_5219 0.44 -0.2
5,954,273 - PP_5219 0.44 -1.9
5,954,273 - PP_5219 0.44 -0.2
5,954,292 + PP_5219 0.45 -0.1
5,954,404 + PP_5219 0.54 +0.2
5,954,405 - PP_5219 0.54 -0.4
5,954,405 - PP_5219 0.54 +0.2
5,954,405 - PP_5219 0.54 -0.1
5,954,419 + PP_5219 0.55 -0.3
5,954,419 + PP_5219 0.55 +0.1
5,954,419 + PP_5219 0.55 +1.3
5,954,419 + PP_5219 0.55 -0.1
5,954,419 + PP_5219 0.55 +0.0
5,954,420 - PP_5219 0.55 +0.5
5,954,420 - PP_5219 0.55 -0.9
5,954,498 + PP_5219 0.61 +0.2
5,954,499 - PP_5219 0.61 +0.5
5,954,524 + PP_5219 0.63 -0.8
5,954,593 + PP_5219 0.68 -0.5
5,954,594 - PP_5219 0.68 +0.1
5,954,653 + PP_5219 0.73 +0.0
5,954,653 + PP_5219 0.73 -1.6
5,954,653 + PP_5219 0.73 +0.5
5,954,654 - PP_5219 0.73 -1.1
5,954,654 - PP_5219 0.73 -1.7
5,954,728 + PP_5219 0.79 +0.4
5,954,728 + PP_5219 0.79 -1.0
5,954,729 - PP_5219 0.79 -1.0
5,954,729 - PP_5219 0.79 +0.8
5,954,729 - PP_5219 0.79 +1.1
5,954,731 + PP_5219 0.79 -0.2
5,954,731 + PP_5219 0.79 +0.4
5,954,731 + PP_5219 0.79 +0.2
5,954,732 - PP_5219 0.79 +0.3
5,954,732 - PP_5219 0.79 +0.2
5,954,744 - PP_5219 0.80 -0.3
5,954,824 + PP_5219 0.86 +0.5
5,954,824 + PP_5219 0.86 +0.1
5,954,824 + PP_5219 0.86 +1.4
5,954,824 + PP_5219 0.86 -0.5
5,954,824 + PP_5219 0.86 +1.0
5,954,824 + PP_5219 0.86 +0.4
5,954,825 - PP_5219 0.86 +0.4
5,954,825 - PP_5219 0.86 -1.7
5,954,825 - PP_5219 0.86 -0.3
5,954,825 - PP_5219 0.86 +0.8
5,954,825 - PP_5219 0.86 -0.8
5,954,825 - PP_5219 0.86 +0.7
5,954,825 - PP_5219 0.86 -0.1
5,954,825 - PP_5219 0.86 -0.4
5,954,953 - -2.1
5,954,953 - -0.3
5,954,953 - -0.1
5,954,959 - -0.6
5,954,979 + -0.3
5,954,980 - -0.1
5,954,991 + +0.5
5,954,991 + +1.2
5,954,991 + +0.4
5,954,992 - -0.3
5,955,035 - -0.6
5,955,035 - -0.4
5,955,058 - -0.1
5,955,077 + +0.4
5,955,107 + +1.9
5,955,107 + -0.0
5,955,107 + +0.6
5,955,108 - -0.2
5,955,129 - -0.2
5,955,260 + PP_5220 0.23 -1.1
5,955,260 + PP_5220 0.23 +0.3
5,955,260 + PP_5220 0.23 -0.5
5,955,260 + PP_5220 0.23 -0.9
5,955,260 + PP_5220 0.23 +0.3
5,955,260 + PP_5220 0.23 -1.4
5,955,260 + PP_5220 0.23 -0.1
5,955,261 - PP_5220 0.23 -1.9
5,955,261 - PP_5220 0.23 -1.9
5,955,261 - PP_5220 0.23 -0.8
5,955,261 - PP_5220 0.23 -1.6
5,955,261 - PP_5220 0.23 +0.3
5,955,261 - PP_5220 0.23 -1.2
5,955,261 - PP_5220 0.23 -0.3
5,955,261 - +2.7
5,955,261 - PP_5220 0.23 -0.9
5,955,305 + PP_5220 0.29 +0.3
5,955,305 + PP_5220 0.29 -1.1
5,955,306 - PP_5220 0.30 -1.1
5,955,306 - PP_5220 0.30 +0.2
5,955,306 - PP_5220 0.30 +2.7
5,955,306 - PP_5220 0.30 -0.3
5,955,306 - PP_5220 0.30 +0.0
5,955,642 - PP_5220 0.80 +0.2
5,955,642 - PP_5220 0.80 +0.1
5,955,642 - PP_5220 0.80 -3.3
5,955,691 + PP_5220 0.87 +1.7
5,955,691 + PP_5220 0.87 +0.5
5,955,692 - PP_5220 0.88 -0.5
5,955,733 + +0.0
5,955,733 + +0.7
5,955,772 + -2.0
5,955,772 + -0.2
5,955,777 + +1.5
5,955,778 - -0.6
5,955,778 - +0.6
5,955,778 - +0.4
5,955,778 - -1.5
5,955,898 - -0.0
5,956,048 + PP_5221 0.14 -0.1
5,956,252 + PP_5221 0.56 -0.5
5,956,252 + PP_5221 0.56 +0.1
5,956,253 - PP_5221 0.56 +0.2
5,956,422 + -0.5
5,956,422 + -0.1
5,956,423 - -0.0
5,956,423 - -0.7
5,956,423 - -0.7
5,956,442 + -1.2
5,956,442 + -0.5
5,956,442 + -0.4
5,956,442 + +0.0
5,956,443 - +0.8
5,956,443 - -0.8
5,956,443 - +1.1
5,956,529 + +0.8
5,956,529 + +2.4
5,956,529 + -0.4
5,956,742 + +0.6
5,956,742 + +0.2
5,956,742 + +0.2
5,956,742 + -0.7
5,956,742 + +0.3
5,956,743 - -0.7

Or see this region's nucleotide sequence