Strain Fitness in Pseudomonas putida KT2440 around PP_5217

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
5,949,800	-		PP_5216	0.34	+1.7
5,949,810	-				+0.7
5,949,854	+		PP_5216	0.38	+1.7
5,949,855	-		PP_5216	0.38	+0.7
5,950,259	+		PP_5216	0.65	+0.3
5,950,260	-		PP_5216	0.65	+1.3
5,950,416	-		PP_5216	0.75	-2.2
5,950,647	+				-1.9
5,950,648	-				+1.5
5,950,648	-				-2.9
5,950,680	+				-0.1
5,950,680	+				+1.0
5,950,780	-				-1.7
5,950,867	+				-2.4
5,950,868	-				-2.9
5,950,868	-				-2.1
5,950,901	+				-2.0
5,951,026	+		PP_5217	0.12	-4.4
5,951,026	+		PP_5217	0.12	-3.9
5,951,027	-		PP_5217	0.12	-2.1
5,951,027	-		PP_5217	0.12	-2.4
5,951,056	+		PP_5217	0.13	-3.1
5,951,056	+		PP_5217	0.13	-2.2
5,951,057	-				-0.6
5,951,057	-		PP_5217	0.13	-4.3
5,951,197	+		PP_5217	0.19	-5.6
5,951,197	+		PP_5217	0.19	-1.2
5,951,197	+		PP_5217	0.19	-5.5
5,951,197	+		PP_5217	0.19	-3.7
5,951,197	+		PP_5217	0.19	-3.3
5,951,198	-		PP_5217	0.19	-2.7
5,951,198	-		PP_5217	0.19	-1.7
5,951,315	+		PP_5217	0.25	-4.5
5,951,315	+		PP_5217	0.25	-4.5
5,951,434	+		PP_5217	0.30	-2.6
5,951,443	+		PP_5217	0.31	-4.1
5,951,443	+		PP_5217	0.31	-2.6
5,951,467	+		PP_5217	0.32	-2.6
5,951,468	-		PP_5217	0.32	-5.2
5,951,468	-		PP_5217	0.32	-3.1
5,951,468	-		PP_5217	0.32	-2.3
5,951,492	-		PP_5217	0.33	-3.2
5,951,566	+		PP_5217	0.36	-2.1
5,951,566	+		PP_5217	0.36	-4.5
5,951,566	+		PP_5217	0.36	-3.9
5,951,567	-		PP_5217	0.36	-4.7
5,951,567	-				+1.7
5,951,567	-		PP_5217	0.36	-3.4
5,951,567	-		PP_5217	0.36	-4.1
5,951,567	-		PP_5217	0.36	-4.8
5,951,567	-		PP_5217	0.36	-4.3
5,951,574	+		PP_5217	0.37	-2.1
5,951,575	-		PP_5217	0.37	-4.9
5,951,902	+		PP_5217	0.52	-4.0
5,951,903	-		PP_5217	0.52	-4.7
5,951,903	-		PP_5217	0.52	-3.0
5,951,977	+		PP_5217	0.55	-3.0
5,951,978	-		PP_5217	0.55	-5.0
5,952,017	-		PP_5217	0.57	-4.5
5,952,017	-		PP_5217	0.57	-2.9
5,952,073	+		PP_5217	0.60	-3.3
5,952,172	+		PP_5217	0.64	-3.5
5,952,172	+		PP_5217	0.64	-1.9
5,952,173	-		PP_5217	0.64	-3.3
5,952,244	+		PP_5217	0.67	-4.2
5,952,245	-		PP_5217	0.67	-3.1
5,952,284	+		PP_5217	0.69	-3.9
5,952,285	-		PP_5217	0.69	-2.7
5,952,431	+		PP_5217	0.76	-5.4
5,952,461	-		PP_5217	0.77	-0.7
5,952,461	-		PP_5217	0.77	-4.1
5,952,468	+		PP_5217	0.78	-0.7
5,952,469	-		PP_5217	0.78	-2.8
5,952,496	+		PP_5217	0.79	-6.4
5,952,566	-		PP_5217	0.82	-2.7
5,952,602	+		PP_5217	0.84	-3.5
5,952,757	+				-4.1
5,952,757	+				-4.6
5,952,757	+				-4.5
5,952,757	+				-2.8
5,952,757	+				-4.9
5,952,758	-				-4.3
5,952,758	-				-2.5
5,952,826	+				-2.4
5,952,826	+				-4.7
5,952,827	-				-3.7
5,952,827	-				-2.9
5,952,827	-				-2.8
5,952,999	+				-2.5
5,953,010	+				-3.7
5,953,010	+				-2.4
5,953,010	+				-4.6
5,953,011	-				-4.7
5,953,011	-				-3.2
5,953,011	-				-4.5
5,953,036	+				-2.3
5,953,051	+				-2.9
5,953,051	+				-3.5
5,953,051	+				-2.1
5,953,052	-				-0.8
5,953,066	+				-2.0
5,953,067	-				+0.4
5,953,067	-				+0.8
5,953,092	-				-0.7
5,953,404	+		PP_5218	0.27	-1.9
5,953,404	+		PP_5218	0.27	-2.2
5,953,405	-		PP_5218	0.27	-1.0
5,953,506	-		PP_5218	0.43	+0.2
5,953,534	-		PP_5218	0.47	-1.4
5,953,534	-		PP_5218	0.47	-0.3
5,953,534	-		PP_5218	0.47	-0.7
5,953,594	-		PP_5218	0.56	-0.0
5,953,594	-		PP_5218	0.56	+0.1
5,953,594	-		PP_5218	0.56	-0.1
5,953,610	+		PP_5218	0.59	-3.2
5,953,611	-		PP_5218	0.59	+0.3
5,953,708	+				+0.0
5,953,708	+				-2.0
5,953,708	+				-0.7
5,953,708	+				-1.0
5,953,709	-				+0.2
5,953,709	-				+1.1
5,953,709	-				-0.4
5,953,770	-				+2.0
5,953,832	-				-0.0
5,953,832	-				-1.9
5,953,894	+		PP_5219	0.14	-0.4
5,953,894	+		PP_5219	0.14	-1.0
5,953,894	+		PP_5219	0.14	+0.1
5,953,895	-		PP_5219	0.15	-0.1