Strain Fitness in Pseudomonas putida KT2440 around PP_5118

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
5,838,961	+		PP_5117	0.33	-0.1
5,839,037	-		PP_5117	0.41	+0.4
5,839,037	-		PP_5117	0.41	+0.2
5,839,037	-		PP_5117	0.41	-0.9
5,839,037	-		PP_5117	0.41	+0.1
5,839,067	+		PP_5117	0.44	-0.1
5,839,067	+		PP_5117	0.44	-0.7
5,839,067	+		PP_5117	0.44	-0.0
5,839,068	-		PP_5117	0.44	-0.9
5,839,068	-		PP_5117	0.44	+0.3
5,839,068	-		PP_5117	0.44	-0.8
5,839,068	-		PP_5117	0.44	-0.1
5,839,068	-		PP_5117	0.44	-0.6
5,839,078	+		PP_5117	0.45	+0.0
5,839,189	+		PP_5117	0.56	-0.2
5,839,189	+		PP_5117	0.56	+1.2
5,839,189	+		PP_5117	0.56	+0.4
5,839,190	-		PP_5117	0.56	+0.4
5,839,222	+		PP_5117	0.60	+0.2
5,839,222	+		PP_5117	0.60	+0.7
5,839,336	-		PP_5117	0.71	+0.0
5,839,378	+		PP_5117	0.75	+1.1
5,839,378	+		PP_5117	0.75	+0.2
5,839,379	-		PP_5117	0.75	+0.4
5,839,379	-		PP_5117	0.75	-2.4
5,839,379	-		PP_5117	0.75	-0.2
5,839,381	+		PP_5117	0.76	-0.5
5,839,382	-		PP_5117	0.76	+0.1
5,839,428	+		PP_5117	0.80	-0.2
5,839,428	+		PP_5117	0.80	+0.6
5,839,428	+		PP_5117	0.80	-0.2
5,839,429	-		PP_5117	0.80	-0.2
5,839,496	+		PP_5117	0.87	-1.9
5,839,496	+		PP_5117	0.87	-0.2
5,839,496	+		PP_5117	0.87	+1.2
5,839,497	-		PP_5117	0.87	-1.4
5,839,558	-				+0.3
5,839,558	-				-0.8
5,839,576	+				+0.4
5,839,579	+				+0.3
5,839,580	-				+0.4
5,839,617	+				-0.4
5,839,618	-				-1.2
5,839,621	+				+0.3
5,839,622	-				-1.6
5,839,787	+				-0.6
5,839,787	+				-0.1
5,839,788	-				+0.8
5,839,788	-				-0.8
5,839,788	-				+0.3
5,839,862	+		PP_5118	0.16	+0.2
5,839,862	+		PP_5118	0.16	+0.5
5,839,862	+		PP_5118	0.16	+1.1
5,839,863	-		PP_5118	0.16	-0.1
5,839,863	-		PP_5118	0.16	+0.4
5,839,918	+		PP_5118	0.22	-1.0
5,839,918	+		PP_5118	0.22	+0.6
5,839,918	+		PP_5118	0.22	+0.2
5,839,918	+		PP_5118	0.22	+0.5
5,839,918	+		PP_5118	0.22	+0.6
5,839,918	+		PP_5118	0.22	+1.3
5,839,918	+				+1.1
5,839,919	-		PP_5118	0.23	-0.3
5,839,919	-		PP_5118	0.23	-0.3
5,839,992	+		PP_5118	0.31	-0.3
5,839,992	+		PP_5118	0.31	+0.4
5,839,992	+		PP_5118	0.31	+1.6
5,839,992	+		PP_5118	0.31	-0.6
5,839,993	-		PP_5118	0.31	-0.2
5,840,255	-		PP_5118	0.62	-0.4
5,840,448	+		PP_5118	0.84	+0.2
5,840,449	-		PP_5118	0.85	-0.1
5,840,462	+		PP_5118	0.86	-1.1
5,840,462	+		PP_5118	0.86	-0.4
5,840,463	-		PP_5118	0.86	+0.3
5,840,463	-		PP_5118	0.86	-0.3
5,840,478	-		PP_5118	0.88	+0.2
5,840,478	-		PP_5118	0.88	-1.3
5,840,643	+				+0.3
5,840,644	-				-0.2
5,840,649	+				-0.7
5,840,670	+				+0.4
5,840,671	-				-0.5
5,840,671	-				+1.5
5,840,679	-				+1.1
5,840,726	-		PP_5119	0.17	-0.2
5,840,793	+		PP_5119	0.27	-0.6
5,840,888	-		PP_5119	0.41	-0.3
5,840,995	+		PP_5119	0.57	+0.5
5,841,100	+		PP_5119	0.73	+0.5
5,841,101	-		PP_5119	0.73	-0.7
5,841,101	-		PP_5119	0.73	-0.7
5,841,148	+		PP_5119	0.80	+0.1
5,841,148	+		PP_5119	0.80	-1.0
5,841,149	-		PP_5119	0.80	+0.6
5,841,149	-		PP_5119	0.80	-0.3
5,841,149	-		PP_5119	0.80	-0.4
5,841,151	+		PP_5119	0.80	-0.2
5,841,152	-		PP_5119	0.80	+1.1
5,841,198	-		PP_5119	0.87	-0.7
5,841,198	-		PP_5119	0.87	-0.4
5,841,323	-				+0.4
5,841,330	-				-0.2
5,841,332	+				+0.5
5,841,332	+				+0.7
5,841,332	+				-0.4
5,841,332	+				-1.2
5,841,387	+				-0.1
5,841,387	+				+1.1
5,841,392	+				+2.3
5,841,395	-				+0.5