Strain Fitness in Pseudomonas putida KT2440 around PP_5116

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
5,836,280	+		PP_5115	0.29	-1.1
5,836,383	+		PP_5115	0.37	-0.7
5,836,384	-		PP_5115	0.37	+1.3
5,836,391	+		PP_5115	0.37	+0.2
5,836,467	+		PP_5115	0.43	-0.2
5,836,467	+		PP_5115	0.43	+1.2
5,836,468	-		PP_5115	0.43	+1.0
5,836,468	-		PP_5115	0.43	-1.8
5,836,480	-		PP_5115	0.44	+0.0
5,836,529	-		PP_5115	0.48	-0.2
5,836,529	-		PP_5115	0.48	+0.5
5,836,534	+		PP_5115	0.48	-1.4
5,836,672	+		PP_5115	0.59	-0.3
5,836,673	-		PP_5115	0.59	-0.9
5,836,673	-		PP_5115	0.59	+0.1
5,836,685	-		PP_5115	0.60	+0.2
5,836,685	-		PP_5115	0.60	-0.8
5,836,722	+		PP_5115	0.63	-0.0
5,836,761	+		PP_5115	0.66	-2.1
5,836,762	-		PP_5115	0.66	-0.7
5,836,812	+		PP_5115	0.70	+1.3
5,836,812	+		PP_5115	0.70	-0.3
5,836,813	-		PP_5115	0.70	-0.5
5,836,813	-		PP_5115	0.70	+0.4
5,836,827	+		PP_5115	0.71	+0.3
5,836,827	+		PP_5115	0.71	+0.5
5,836,827	+		PP_5115	0.71	-0.6
5,836,827	+		PP_5115	0.71	+0.3
5,836,827	+		PP_5115	0.71	+0.9
5,836,827	+		PP_5115	0.71	+0.9
5,836,827	+		PP_5115	0.71	+0.5
5,836,828	-		PP_5115	0.71	-0.3
5,836,828	-		PP_5115	0.71	-1.2
5,836,828	-		PP_5115	0.71	-0.8
5,836,867	-		PP_5115	0.74	+0.5
5,837,045	+		PP_5115	0.87	+0.8
5,837,045	+		PP_5115	0.87	-3.8
5,837,073	-		PP_5115	0.90	+0.6
5,837,125	+				+0.5
5,837,125	+				+0.6
5,837,125	+				+0.7
5,837,125	+				-1.0
5,837,126	-				-0.4
5,837,304	+				-0.6
5,837,304	+				-2.0
5,837,305	-				+0.1
5,837,305	-				-0.7
5,837,305	-				+0.3
5,837,387	+		PP_5116	0.14	-3.5
5,837,388	-		PP_5116	0.14	+0.2
5,837,388	-		PP_5116	0.14	+0.6
5,837,390	+		PP_5116	0.14	-0.1
5,837,390	+		PP_5116	0.14	-0.7
5,837,390	+		PP_5116	0.14	+0.3
5,837,391	-		PP_5116	0.14	+0.8
5,837,425	+		PP_5116	0.16	-1.8
5,837,425	+		PP_5116	0.16	-0.2
5,837,479	+		PP_5116	0.20	+0.6
5,837,479	+		PP_5116	0.20	-0.3
5,837,479	+		PP_5116	0.20	+0.3
5,837,480	-		PP_5116	0.20	+0.1
5,837,480	-		PP_5116	0.20	-1.5
5,837,540	+		PP_5116	0.25	-0.7
5,837,540	+		PP_5116	0.25	+2.0
5,837,540	+		PP_5116	0.25	+1.3
5,837,540	+		PP_5116	0.25	-0.1
5,837,540	+		PP_5116	0.25	+1.1
5,837,540	+		PP_5116	0.25	-0.1
5,837,578	-		PP_5116	0.28	+0.7
5,837,727	+		PP_5116	0.38	-1.1
5,837,727	+		PP_5116	0.38	-0.7
5,837,728	-		PP_5116	0.39	+0.0
5,837,796	+		PP_5116	0.43	+0.7
5,837,796	+		PP_5116	0.43	+4.0
5,837,809	-		PP_5116	0.44	-0.8
5,837,845	+		PP_5116	0.47	-0.3
5,837,846	-		PP_5116	0.47	+0.1
5,837,846	-		PP_5116	0.47	-1.1
5,837,846	-		PP_5116	0.47	-0.9
5,837,846	-		PP_5116	0.47	-0.4
5,837,846	-		PP_5116	0.47	+1.0
5,837,960	+		PP_5116	0.55	-0.8
5,838,051	-		PP_5116	0.62	+0.3
5,838,051	-		PP_5116	0.62	-1.7
5,838,160	+		PP_5116	0.70	+0.2
5,838,161	-		PP_5116	0.70	+1.1
5,838,179	+		PP_5116	0.71	+0.1
5,838,179	+		PP_5116	0.71	+0.2
5,838,179	+		PP_5116	0.71	+0.1
5,838,179	+		PP_5116	0.71	+0.3
5,838,180	-		PP_5116	0.71	+0.0
5,838,260	+		PP_5116	0.77	+0.3
5,838,261	-		PP_5116	0.77	+0.4
5,838,395	+		PP_5116	0.87	-1.0
5,838,395	+		PP_5116	0.87	-0.0
5,838,396	-		PP_5116	0.87	-0.5
5,838,433	+		PP_5116	0.90	+1.0
5,838,434	-				-0.9
5,838,434	-				-0.6
5,838,434	-				+0.3
5,838,445	-				+0.7
5,838,512	+				-0.9
5,838,512	+				-1.1
5,838,513	-				+0.4
5,838,513	-				+0.5
5,838,513	-				-0.3
5,838,577	+				+0.8
5,838,603	+				+0.8
5,838,604	-				-0.9
5,838,604	-				-1.2
5,838,961	+		PP_5117	0.33	-0.1
5,839,037	-		PP_5117	0.41	+0.4
5,839,037	-		PP_5117	0.41	+0.2
5,839,037	-		PP_5117	0.41	-0.9
5,839,037	-		PP_5117	0.41	+0.1
5,839,067	+		PP_5117	0.44	-0.1
5,839,067	+		PP_5117	0.44	-0.7
5,839,067	+		PP_5117	0.44	-0.0
5,839,068	-		PP_5117	0.44	-0.9
5,839,068	-		PP_5117	0.44	+0.3
5,839,068	-		PP_5117	0.44	-0.8
5,839,068	-		PP_5117	0.44	-0.1
5,839,068	-		PP_5117	0.44	-0.6
5,839,078	+		PP_5117	0.45	+0.0
5,839,189	+		PP_5117	0.56	-0.2
5,839,189	+		PP_5117	0.56	+1.2
5,839,189	+		PP_5117	0.56	+0.4
5,839,190	-		PP_5117	0.56	+0.4
5,839,222	+		PP_5117	0.60	+0.2
5,839,222	+		PP_5117	0.60	+0.7
5,839,336	-		PP_5117	0.71	+0.0
5,839,378	+		PP_5117	0.75	+1.1
5,839,378	+		PP_5117	0.75	+0.2
5,839,379	-		PP_5117	0.75	+0.4
5,839,379	-		PP_5117	0.75	-2.4
5,839,379	-		PP_5117	0.75	-0.2
5,839,381	+		PP_5117	0.76	-0.5
5,839,382	-		PP_5117	0.76	+0.1
5,839,428	+		PP_5117	0.80	-0.2
5,839,428	+		PP_5117	0.80	+0.6
5,839,428	+		PP_5117	0.80	-0.2
5,839,429	-		PP_5117	0.80	-0.2
5,839,496	+		PP_5117	0.87	-1.9
5,839,496	+		PP_5117	0.87	-0.2
5,839,496	+		PP_5117	0.87	+1.2
5,839,497	-		PP_5117	0.87	-1.4
5,839,558	-				+0.3
5,839,558	-				-0.8