Strain Fitness in Pseudomonas putida KT2440 around PP_5112

Experiment: P. put South MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5111 and PP_5112 are separated by 231 nucleotidesPP_5112 and PP_5113 overlap by 8 nucleotides PP_5111: PP_5111 - Signal Recognition Particle protein translocation receptor GTPase, at 5,830,659 to 5,832,143 _5111 PP_5112: PP_5112 - putative processin peptidase, at 5,832,375 to 5,833,730 _5112 PP_5113: PP_5113 - predicted Zn-dependent peptidases, at 5,833,723 to 5,835,213 _5113 Position (kb) 5832 5833 5834Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5832.217 kb on - strandat 5832.217 kb on - strandat 5832.217 kb on - strandat 5832.256 kb on - strandat 5832.365 kb on + strandat 5832.365 kb on + strandat 5832.374 kb on + strandat 5832.375 kb on - strandat 5832.375 kb on - strandat 5832.375 kb on - strandat 5832.385 kb on + strandat 5832.546 kb on + strand, within PP_5112at 5832.546 kb on + strand, within PP_5112at 5832.547 kb on - strand, within PP_5112at 5832.564 kb on + strand, within PP_5112at 5832.565 kb on - strand, within PP_5112at 5832.705 kb on + strand, within PP_5112at 5832.705 kb on + strand, within PP_5112at 5832.705 kb on + strand, within PP_5112at 5832.706 kb on - strand, within PP_5112at 5832.714 kb on + strand, within PP_5112at 5832.714 kb on + strand, within PP_5112at 5832.717 kb on + strand, within PP_5112at 5832.717 kb on + strand, within PP_5112at 5832.717 kb on + strand, within PP_5112at 5832.718 kb on - strand, within PP_5112at 5832.718 kb on - strand, within PP_5112at 5832.984 kb on + strand, within PP_5112at 5832.984 kb on + strand, within PP_5112at 5832.985 kb on - strand, within PP_5112at 5832.996 kb on + strand, within PP_5112at 5833.071 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.163 kb on - strand, within PP_5112at 5833.163 kb on - strand, within PP_5112at 5833.163 kb on - strand, within PP_5112at 5833.188 kb on + strandat 5833.188 kb on + strand, within PP_5112at 5833.188 kb on + strand, within PP_5112at 5833.188 kb on + strand, within PP_5112at 5833.189 kb on - strand, within PP_5112at 5833.237 kb on + strand, within PP_5112at 5833.238 kb on - strand, within PP_5112at 5833.238 kb on - strand, within PP_5112at 5833.344 kb on + strand, within PP_5112at 5833.528 kb on - strand, within PP_5112at 5833.528 kb on - strand, within PP_5112at 5833.668 kb on + strandat 5833.668 kb on + strandat 5833.669 kb on - strandat 5833.669 kb on - strandat 5833.669 kb on - strandat 5833.669 kb on - strandat 5833.669 kb on - strandat 5833.702 kb on + strandat 5833.702 kb on + strandat 5833.702 kb on + strandat 5833.702 kb on + strandat 5833.702 kb on + strandat 5833.703 kb on - strandat 5833.703 kb on - strandat 5833.703 kb on - strandat 5833.703 kb on - strandat 5834.302 kb on + strand, within PP_5113at 5834.357 kb on - strand, within PP_5113at 5834.371 kb on + strand, within PP_5113at 5834.452 kb on + strand, within PP_5113at 5834.452 kb on + strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.455 kb on - strand, within PP_5113at 5834.472 kb on - strand, within PP_5113

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put South MOI 1
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5,832,217 - -0.2
5,832,217 - +0.6
5,832,217 - +0.6
5,832,256 - -1.0
5,832,365 + -0.8
5,832,365 + +0.6
5,832,374 + +0.9
5,832,375 - -2.1
5,832,375 - -1.6
5,832,375 - -0.8
5,832,385 + +0.5
5,832,546 + PP_5112 0.13 +0.2
5,832,546 + PP_5112 0.13 +0.0
5,832,547 - PP_5112 0.13 -0.0
5,832,564 + PP_5112 0.14 +0.2
5,832,565 - PP_5112 0.14 -1.4
5,832,705 + PP_5112 0.24 +0.7
5,832,705 + PP_5112 0.24 -1.0
5,832,705 + PP_5112 0.24 +1.0
5,832,706 - PP_5112 0.24 -1.2
5,832,714 + PP_5112 0.25 -1.2
5,832,714 + PP_5112 0.25 +1.0
5,832,717 + PP_5112 0.25 -0.3
5,832,717 + PP_5112 0.25 +2.3
5,832,717 + PP_5112 0.25 -0.5
5,832,718 - PP_5112 0.25 -1.4
5,832,718 - PP_5112 0.25 -1.0
5,832,984 + PP_5112 0.45 -0.4
5,832,984 + PP_5112 0.45 -0.7
5,832,985 - PP_5112 0.45 -0.3
5,832,996 + PP_5112 0.46 +0.1
5,833,071 + PP_5112 0.51 +0.4
5,833,162 + PP_5112 0.58 +0.2
5,833,162 + PP_5112 0.58 +0.7
5,833,162 + PP_5112 0.58 -0.5
5,833,162 + PP_5112 0.58 +0.6
5,833,162 + PP_5112 0.58 -0.3
5,833,162 + PP_5112 0.58 -0.5
5,833,163 - PP_5112 0.58 -1.5
5,833,163 - PP_5112 0.58 -1.9
5,833,163 - PP_5112 0.58 -0.9
5,833,188 + +2.1
5,833,188 + PP_5112 0.60 +0.6
5,833,188 + PP_5112 0.60 -0.8
5,833,188 + PP_5112 0.60 -0.0
5,833,189 - PP_5112 0.60 -5.1
5,833,237 + PP_5112 0.64 +0.2
5,833,238 - PP_5112 0.64 -4.2
5,833,238 - PP_5112 0.64 -1.7
5,833,344 + PP_5112 0.71 -0.1
5,833,528 - PP_5112 0.85 -0.8
5,833,528 - PP_5112 0.85 -1.6
5,833,668 + -0.6
5,833,668 + +0.6
5,833,669 - -1.5
5,833,669 - -1.8
5,833,669 - -1.0
5,833,669 - -2.4
5,833,669 - -0.6
5,833,702 + -0.2
5,833,702 + +1.1
5,833,702 + +0.2
5,833,702 + -0.1
5,833,702 + -0.8
5,833,703 - -4.7
5,833,703 - -3.5
5,833,703 - -1.0
5,833,703 - -2.5
5,834,302 + PP_5113 0.39 +0.0
5,834,357 - PP_5113 0.43 -5.0
5,834,371 + PP_5113 0.43 -2.5
5,834,452 + PP_5113 0.49 -0.4
5,834,452 + PP_5113 0.49 -0.4
5,834,453 - PP_5113 0.49 -2.0
5,834,453 - PP_5113 0.49 -2.6
5,834,453 - PP_5113 0.49 -1.2
5,834,453 - PP_5113 0.49 -2.4
5,834,453 - PP_5113 0.49 -2.1
5,834,453 - PP_5113 0.49 -3.0
5,834,455 - PP_5113 0.49 -3.2
5,834,472 - PP_5113 0.50 -2.1

Or see this region's nucleotide sequence